PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr027119.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

NAC

Protein Properties

Length: 204aa MW: 23088.3 Da PI: 9.5495

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr027119.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	154.7	4e-48	14	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 lppGfrF+Ptdeelv +yL+ kv + +l++ ++i+e++++ ++PwdLp e+e yfFs+r++ky++g+r+nr+t+sgyWkatg dk+++s+ k+ Pbr027119.1 14 LPPGFRFQPTDEELVFQYLRCKVFSCPLPA-SIIPEINVCLYDPWDLPGD---LEQERYFFSNRESKYRNGNRANRVTSSGYWKATGVDKKIVSSrKN 107 79**************************.89***********54...46799*******************************98567 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 + vg kktLvfykg++p+ +ktdWvmhey l Pbr027119.1 108 NIVGKKKTLVFYKGKSPNVSKTDWVMHEYCL 138 77*************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.28E-56	10	168	IPR003441	NAC domain
PROSITE profile	PS51005	53.895	14	168	IPR003441	NAC domain
Pfam	PF02365	2.2E-25	15	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MDKFNFPRNG MTRLPPGFRF QPTDEELVFQ YLRCKVFSCP LPASIIPEIN VCLYDPWDLP 60 GDLEQERYFF SNRESKYRNG NRANRVTSSG YWKATGVDKK IVSSRKNNIV GKKKTLVFYK 120 GKSPNVSKTD WVMHEYCLVN AETAASIHTT ENALTPKGNW VLCRVFLKKR SGKTDEEIMV 180 NYNGIRVCDN ASPVSSSSSC SSS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-44	14	173	17	170	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-44	14	173	17	170	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-44	14	173	17	170	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-44	14	173	17	170	NO APICAL MERISTEM PROTEIN
4dul_A	2e-44	14	173	17	170	NAC domain-containing protein 19
4dul_B	2e-44	14	173	17	170	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078, ECO:0000269\|PubMed:24442717}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr027119.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269\|PubMed:21673078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018498698.1	1e-151	PREDICTED: NAC domain-containing protein 83-like
Swissprot	Q9FY93	3e-78	NAC83_ARATH; NAC domain-containing protein 83
TrEMBL	A0A498I8K5	1e-140	A0A498I8K5_MALDO; Uncharacterized protein
STRING	XP_008392723.1	1e-137	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF704	34	139

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	3e-80	NAC domain containing protein 83

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]