PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr026824.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | bHLH | ||||||||
Protein Properties | Length: 208aa MW: 24008.3 Da PI: 9.0862 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31 | 4.5e-10 | 17 | 63 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +E++RR+r++ +++L +llPk+ + ++ ls e +A++YIks Pbr026824.1 17 RVVEKNRRNRMKLLYSNLYSLLPKQ--TFKEPLSQTEQIDEAIKYIKSQ 63 679*********************7..59999***************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.62E-11 | 9 | 80 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 10.696 | 11 | 63 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.7E-9 | 14 | 81 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-6 | 17 | 62 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MDRNQANESS STKVERRVVE KNRRNRMKLL YSNLYSLLPK QTFKEPLSQT EQIDEAIKYI 60 KSQESKLQKL KEKKESLMRT RKRSYATACV NVENTRSAKA PLIKIHEIDS TLEVVLISGL 120 ENHQFMFYEI IRLLDAEHAN VVHANFSTLG DSVFHGVRAE MGKSMSKFGA ARITEKLNRF 180 INGSTCDQES QQDYFCDFEF QPVTTWD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr026824.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009336213.1 | 1e-139 | PREDICTED: transcription factor bHLH36-like | ||||
TrEMBL | A0A498J6Q7 | 1e-99 | A0A498J6Q7_MALDO; Uncharacterized protein | ||||
STRING | XP_009336213.1 | 1e-138 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF906 | 34 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 3e-19 | bHLH family protein |