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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr026823.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | bHLH | ||||||||
Protein Properties | Length: 221aa MW: 25042.3 Da PI: 7.6644 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.2 | 3.4e-09 | 17 | 62 | 6 | 53 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIks 53 +E++RR++++ +++L +llP+ + p++ ls e +A++YIks Pbr026823.1 17 RVVEKNRRNHLKLLYSKLYSLLPNqN---PKEPLSVNEQIDEAINYIKS 62 679*********************55...******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.32E-11 | 8 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.23 | 11 | 63 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.3E-9 | 14 | 80 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.7E-6 | 17 | 62 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MNNNQASKSS STKVERRVVE KNRRNHLKLL YSKLYSLLPN QNPKEPLSVN EQIDEAINYI 60 KSKESKLQKA KEKKESLTGT RKRSNATAFV NVESMEPKTL NIESVRSTKA PQIQIHETGS 120 TVEVVLTSGL DNHQFIFYEI IRILDEEQAD VVYASFSTLG DTIFHVVRAE MDKSMLDFGA 180 ARITEKLNRF VNGSISDQEL RQDCSWDFKF EPAAIIGDQV * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr026823.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028964294.1 | 1e-140 | transcription factor bHLH162-like | ||||
TrEMBL | A0A498J6Q7 | 1e-135 | A0A498J6Q7_MALDO; Uncharacterized protein | ||||
STRING | XP_009336214.1 | 1e-162 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF906 | 34 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 8e-19 | bHLH family protein |