PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr026697.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NAC
Protein Properties Length: 273aa    MW: 31348.5 Da    PI: 5.1863
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr026697.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.41.4e-49101381129
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                  lppGfrF P+deelv++yL kk+++++     ++ e+d++ +ePw+Lp+ +k + +ewyfFs rd+kyatg r+nrat++gyWkatgkd+ v++  +g
  Pbr026697.1  10 LPPGFRFYPSDEELVCHYLYKKITNEEALK-GTLVEIDLHICEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATSTGYWKATGKDRLVMEPgTG 106
                  79***********************99544.78***************88888999**************************************9778 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrle 129
                    vg++ktLvfy++rap+g kt W+mhe+rle
  Pbr026697.1 107 DIVGMRKTLVFYRNRAPNGIKTGWIMHEFRLE 138
                  88***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-608156IPR003441NAC domain
PROSITE profilePS5100557.78410156IPR003441NAC domain
PfamPF023651.5E-2711137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MGLRDIGATL PPGFRFYPSD EELVCHYLYK KITNEEALKG TLVEIDLHIC EPWQLPEVAK  60
LNANEWYFFS FRDRKYATGF RTNRATSTGY WKATGKDRLV MEPGTGDIVG MRKTLVFYRN  120
RAPNGIKTGW IMHEFRLETP HMPPKEDWVL CRVFYKGKAA ENSTKLNPHD FTLETTPCTV  180
PLNLVPPPPT YDQTMPCVYN QNHNQSNAFL NLLQLPHQEK YTNSSVSELN MKNDDEYGFL  240
WDMNLEGSFD NGVAPNLDEM GFQVDENSMD LL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-47916216171NO APICAL MERISTEM PROTEIN
1ut4_B7e-47916216171NO APICAL MERISTEM PROTEIN
1ut7_A7e-47916216171NO APICAL MERISTEM PROTEIN
1ut7_B7e-47916216171NO APICAL MERISTEM PROTEIN
3swm_A7e-47916219174NAC domain-containing protein 19
3swm_B7e-47916219174NAC domain-containing protein 19
3swm_C7e-47916219174NAC domain-containing protein 19
3swm_D7e-47916219174NAC domain-containing protein 19
3swp_A7e-47916219174NAC domain-containing protein 19
3swp_B7e-47916219174NAC domain-containing protein 19
3swp_C7e-47916219174NAC domain-containing protein 19
3swp_D7e-47916219174NAC domain-containing protein 19
4dul_A7e-47916216171NAC domain-containing protein 19
4dul_B7e-47916216171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr026697.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1981220.0KF198122.1 Malus hupehensis NAC domain protein (NAC86) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009336141.10.0PREDICTED: NAC domain-containing protein 21/22-like
SwissprotQ84TE63e-62NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A498JXQ40.0A0A498JXQ4_MALDO; Uncharacterized protein
STRINGXP_009336141.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43813359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.16e-93NAC domain containing protein 74
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]