PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr026551.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 314aa    MW: 35068.3 Da    PI: 6.6437
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr026551.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF451.4e-141252343
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                 i n++ r+  f kR++ + KKA ELS LCd++va+i++  +
  Pbr026551.1 12 IPNETARKMAFRKRKKSVYKKADELSKLCDIDVALIVYEAD 52
                 889**********************************9766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-4262IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.479254IPR002100Transcription factor, MADS-box
CDDcd001201.62E-14349No hitNo description
PRINTSPR004046.2E-6424IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.41E-15682IPR002100Transcription factor, MADS-box
PfamPF003193.4E-141253IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-62439IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-63960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MVTPTRRSLE LIPNETARKM AFRKRKKSVY KKADELSKLC DIDVALIVYE ADQRKGIRPV  60
QPETWPQDPV EFNRILSRYK ASKDAAAPGF LKRSFSLSDF YGAKMKKDDD GGDGDHSDGG  120
DDGDGGDDGD DDDHVDPKLQ KPGNKHISEN KYPTWDARID LFSEDELIKF IASLEAKIQA  180
STLEIDSMER YYAVKQNQNL SRTHSSSSET PRLLNPAYFD VQMPPSQDTV NPFIHDALGQ  240
KVTHELAKWG GFNKNSVNST TTSTTTSVME LKNPMHTTST TSTSAMESKP PLPVKRPMLP  300
SAWILNSELQ KKI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12226RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr026551.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009355438.10.0PREDICTED: agamous-like MADS-box protein AGL82
TrEMBLA0A498JAV81e-110A0A498JAV8_MALDO; Uncharacterized protein
STRINGXP_009355438.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14708511
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.13e-15M-type_MADS family protein