PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr026441.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 1175aa MW: 134370 Da PI: 7.7081

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr026441.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.1	8.5e-05	95	116	8	29
HHHHHHHHHHHHHHHHHCTSCC CS HLH 8 rErrRRdriNsafeeLrellPk 29 Er+RR r+++++ Lr+l+P+ Pbr026441.1 95 SERKRRGRMKERLYALRSLVPN 116 6********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.76E-6	83	121	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	8.664	87	142	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.0E-5	89	128	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	0.0019	89	119	No hit	No description
SuperFamily	SSF52540	1.79E-19	249	361	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Pfam	PF00931	1.1E-6	259	361	IPR002182	NB-ARC
Gene3D	G3DSA:3.40.50.300	4.1E-9	262	391	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PRINTS	PR00364	2.2E-14	277	292	No hit	No description
PRINTS	PR00364	2.2E-14	349	363	No hit	No description
SuperFamily	SSF52058	2.52E-31	389	662	IPR032675	Leucine-rich repeat domain, L domain-like
Gene3D	G3DSA:3.80.10.10	7.7E-22	392	617	IPR032675	Leucine-rich repeat domain, L domain-like
Gene3D	G3DSA:3.80.10.10	7.9E-31	618	881	IPR032675	Leucine-rich repeat domain, L domain-like
SuperFamily	SSF52058	1.11E-33	632	890	IPR032675	Leucine-rich repeat domain, L domain-like
PRINTS	PR00364	2.2E-14	639	655	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0043531	Molecular Function	ADP binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 1175 aa Download sequence Send to blast
MANFDCELVI NGCLDDYNLF GPASTTPPGP MFGFNDAFLP DPSTFVLATL PNFDEEMKDE 60 EDYNDGEDSS GTTNTNTTTT TTKRQKVDRS RTLVSERKRR GRMKERLYAL RSLVPNITKI 120 DVSQVEEKGF YVKVACNKGQ EVATALYKAL ESLACFNVQS SNLNTVSANR FELTFTLNRG 180 SYARAFAQLK KRFYESIDKV QKWRDALTTA ANLAGFDYSE KSRTEAEADL IKKVVDDIWT 240 RLKCESSCNL EGLVGIESRI EQIESLLDIH LQDACITVGI WGMGGIGKTT LAEIVFHRLS 300 SKFEARCFLR NVRENLEQPN GLDHLEKTLL KEILKEEGLS IGLTFVRERL IRTKVLIVLD 360 DGTRHVQAIL IKCWQTEKRP LKRADFKVMF NLEMLIVYSE PFGNYSTLTT SLDLPNSLRY 420 LYWYRYPWES LPSNFTPENL VELHMPYSRV NQVWKEDKRL VNLEVINLQY SRNLTEVPNL 480 FGSPKIGHIN LHGCESLVEI PSYFQHLDKL TYLDLGRCTS CPISLPNSLR YLHWDQYPLK 540 SLPSKFSPEN LVELHMPNSR VKHLWKEDKR LVNLKVINLQ CSSNLIEVPN LSRSKKIGHI 600 NLHGCKSLVE IPSYFQHLDK LTYLDLGSCT SLISLTNICK LKSLKFLNLS WCSKLESFPE 660 IAVPIKHLES PILNKTAIQE LHSSIKFLPA LERIDLRGCR RILSIPKSIC ELKSLVSLDL 720 KWCSMFYRFP QILEPMEHLQ SLNLETTAVE KLPSSIGNLI GLHTLDLGMC KNLKVVSRSI 780 YKLTNLKNLS FYACRKLKKL PSNSVGLPSL ELLNLSRSGL LGIPDGLVCT TSLYSLDLSR 840 SMIRNLPASI KQASPLSTLR LIGCKWLQSL PELPLVDSLK AHGCTSLKTV SSSRTTHYTQ 900 EIKLRQDWFR TGLLGFALAV VVSWKLNCQL NRMVIRARFN AKFMGESHEM FTSQFHISLV 960 DWKLNDYRYD QHHVYLWDMT FISHEVAKKC FPDVCKHANE ASVEFCLVVG DSSEPTSYMK 1020 VEKCGICPLY AEDAERFKFD HVIIRGVPEA KRVIVSGEPE EEEEIRHDDF EASDPKDSGS 1080 SDESEEEASG SGIDNSADLL VRQSYRETSL MDLKPMRVKS LKPMLFKSLK STWNEVPRPY 1140 YYCPRHSVEY EGEEEEERRA REFHEGNFTW KWIK*

Sequence ? help Back to Top

Protein Sequence Length: 1175 aa Download sequence Send to blast

MANFDCELVI NGCLDDYNLF GPASTTPPGP MFGFNDAFLP DPSTFVLATL PNFDEEMKDE  60
EDYNDGEDSS GTTNTNTTTT TTKRQKVDRS RTLVSERKRR GRMKERLYAL RSLVPNITKI  120
DVSQVEEKGF YVKVACNKGQ EVATALYKAL ESLACFNVQS SNLNTVSANR FELTFTLNRG  180
SYARAFAQLK KRFYESIDKV QKWRDALTTA ANLAGFDYSE KSRTEAEADL IKKVVDDIWT  240
RLKCESSCNL EGLVGIESRI EQIESLLDIH LQDACITVGI WGMGGIGKTT LAEIVFHRLS  300
SKFEARCFLR NVRENLEQPN GLDHLEKTLL KEILKEEGLS IGLTFVRERL IRTKVLIVLD  360
DGTRHVQAIL IKCWQTEKRP LKRADFKVMF NLEMLIVYSE PFGNYSTLTT SLDLPNSLRY  420
LYWYRYPWES LPSNFTPENL VELHMPYSRV NQVWKEDKRL VNLEVINLQY SRNLTEVPNL  480
FGSPKIGHIN LHGCESLVEI PSYFQHLDKL TYLDLGRCTS CPISLPNSLR YLHWDQYPLK  540
SLPSKFSPEN LVELHMPNSR VKHLWKEDKR LVNLKVINLQ CSSNLIEVPN LSRSKKIGHI  600
NLHGCKSLVE IPSYFQHLDK LTYLDLGSCT SLISLTNICK LKSLKFLNLS WCSKLESFPE  660
IAVPIKHLES PILNKTAIQE LHSSIKFLPA LERIDLRGCR RILSIPKSIC ELKSLVSLDL  720
KWCSMFYRFP QILEPMEHLQ SLNLETTAVE KLPSSIGNLI GLHTLDLGMC KNLKVVSRSI  780
YKLTNLKNLS FYACRKLKKL PSNSVGLPSL ELLNLSRSGL LGIPDGLVCT TSLYSLDLSR  840
SMIRNLPASI KQASPLSTLR LIGCKWLQSL PELPLVDSLK AHGCTSLKTV SSSRTTHYTQ  900
EIKLRQDWFR TGLLGFALAV VVSWKLNCQL NRMVIRARFN AKFMGESHEM FTSQFHISLV  960
DWKLNDYRYD QHHVYLWDMT FISHEVAKKC FPDVCKHANE ASVEFCLVVG DSSEPTSYMK  1020
VEKCGICPLY AEDAERFKFD HVIIRGVPEA KRVIVSGEPE EEEEIRHDDF EASDPKDSGS  1080
SDESEEEASG SGIDNSADLL VRQSYRETSL MDLKPMRVKS LKPMLFKSLK STWNEVPRPY  1140
YYCPRHSVEY EGEEEEERRA REFHEGNFTW KWIK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4u06_A	6e-14	513	818	18	322	LIC10831

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr026441.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ889726	2e-72	HQ889726.1 Malus xiaojinensis bHLH01 (bHLH01) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018498394.1	0.0	PREDICTED: TMV resistance protein N-like
STRING	XP_008355126.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3	9	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12020.1	8e-45	WRKY family protein