PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr026163.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

NF-YA

Protein Properties

Length: 165aa MW: 18621.3 Da PI: 10.8224

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr026163.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	96.5	2.9e-30	33	89	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq Rakle+++kl +k kpylheS h hAl+R+RgsgGrF Pbr026163.1 33 NEPIYVNAKQYRAILRRRQFRAKLEAQNKL-IKVHKPYLHESQHVHALKRARGSGGRF 89 59**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	5.4E-34	31	92	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	34.304	32	92	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	3.4E-25	34	89	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	6.4E-22	35	57	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	37	57	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	6.4E-22	66	89	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MRYLPCKCLQ IHHPQVLGIT PGRVPLPLDL TENEPIYVNA KQYRAILRRR QFRAKLEAQN 60 KLIKVHKPYL HESQHVHALK RARGSGGRFL NKKKVKDSKP NTLNHRVNAS DVAVGNTVHE 120 PNNYRDGASI TSCSEVTRTS NSGDKFPRQD FRFSGYPSHI GGTM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-19	33	98	2	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr026163.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008228232.1	2e-87	PREDICTED: nuclear transcription factor Y subunit A-3 isoform X3
Refseq	XP_016649370.1	2e-87	PREDICTED: nuclear transcription factor Y subunit A-3 isoform X1
Refseq	XP_016649371.1	2e-87	PREDICTED: nuclear transcription factor Y subunit A-3 isoform X1
Refseq	XP_016649372.1	2e-87	PREDICTED: nuclear transcription factor Y subunit A-3 isoform X1
Refseq	XP_016649373.1	2e-87	PREDICTED: nuclear transcription factor Y subunit A-3 isoform X1
Refseq	XP_016649374.1	2e-87	PREDICTED: nuclear transcription factor Y subunit A-3 isoform X1
Refseq	XP_016649375.1	2e-87	PREDICTED: nuclear transcription factor Y subunit A-3 isoform X1
Refseq	XP_016649377.1	2e-87	PREDICTED: nuclear transcription factor Y subunit A-3 isoform X3
Swissprot	Q93ZH2	8e-48	NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
TrEMBL	A0A314XI63	6e-86	A0A314XI63_PRUYE; Nuclear transcription factor Y subunit A-3 isoform X1
TrEMBL	A0A314XXE2	2e-85	A0A314XXE2_PRUYE; Nuclear transcription factor Y subunit A-3 isoform X1
STRING	XP_009372379.1	4e-85	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10120	25	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72830.1	3e-50	nuclear factor Y, subunit A3