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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr026154.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | MYB | ||||||||
Protein Properties | Length: 380aa MW: 42234.4 Da PI: 6.4995 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31 | 6e-10 | 14 | 67 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHH.....HHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktI.....artmg.kgRtlkqcksrwqkyl 48 rg W++eEde+l+++++ g+W++ a++ + + R++k+c++rw +yl Pbr026154.1 14 RGLWSPEEDEKLINYITTNSHGCWSSFllfkfASMRPgLQRCGKSCRLRWINYL 67 788*******************776521111144444899************97 PP | |||||||
2 | Myb_DNA-binding | 48.3 | 2.3e-15 | 73 | 115 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+++++E l+++++ lG++ W+ Ia++++ gRt++++k++w+ Pbr026154.1 73 RGSFSPQEAALIIELHSILGNR-WAQIAKHLP-GRTDNEVKNFWN 115 899*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-20 | 6 | 70 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 9.047 | 9 | 67 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 1.27E-25 | 11 | 114 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.8E-5 | 13 | 69 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.2E-8 | 14 | 67 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.81E-7 | 17 | 67 | No hit | No description |
PROSITE profile | PS51294 | 25.209 | 68 | 122 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-25 | 71 | 123 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-15 | 72 | 120 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.6E-14 | 73 | 116 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.14E-11 | 75 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 380 aa Download sequence Send to blast |
MGHHSCCNKQ KVKRGLWSPE EDEKLINYIT TNSHGCWSSF LLFKFASMRP GLQRCGKSCR 60 LRWINYLRPD LKRGSFSPQE AALIIELHSI LGNRWAQIAK HLPGRTDNEV KNFWNSSIKK 120 KLISHEVIPA FASFSNDHIH NPSGHGSEEG FFTLNTNPNL CSQPQDQLYL PIVPSPVPSL 180 GLNYHGDFNN ILKLDQTNYA SNFVDHFLPP FQLPSNNASS YESSSWSLGY QPQQQFDPNI 240 QQVQNFSINE AAAAQYNNIG NELMVPISMA SSEPVAYENP FILPTVPKFC EIIDGNVCRM 300 PILYPSDLQE LDSLAKLSCF TSGHGSHPQD LQFPSNQLEC IDAIMSLLPS SSSSSSPSSA 360 SPSLLPLSSS QFDANFNAH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-28 | 14 | 122 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr026154.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM476581 | 6e-48 | AM476581.2 Vitis vinifera contig VV78X241396.15, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009355527.1 | 0.0 | PREDICTED: transcription factor MYB26-like | ||||
Refseq | XP_009355528.1 | 0.0 | PREDICTED: transcription factor MYB26-like | ||||
TrEMBL | A0A498HC15 | 0.0 | A0A498HC15_MALDO; Uncharacterized protein | ||||
STRING | XP_009355527.1 | 0.0 | (Pyrus x bretschneideri) | ||||
STRING | XP_009355528.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3014 | 31 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13890.2 | 4e-73 | myb domain protein 26 |