PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pbr026136.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 509aa MW: 57408.9 Da PI: 7.1518 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 113.9 | 1.7e-35 | 61 | 230 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLpk........................................kvka... 53 ppG rF Ptd+el+++yL++k+ ++ +++ i++++iy+++P++L k Pbr026136.1 61 PPGWRFCPTDQELISFYLTRKLMNNIyhpQPVNCRITDLHIYDFNPKKLAGlslslslslslshththahthartrtrhgctttmtcrvneK--Yqlp 156 9*********************9998665555445**************845899********************99999999888755542..0345 PP NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 e+ e+yfF++rd+ky++g r++r++++g+Wkatg +k++ + +g+++g k+tLvf+ g+++kg+ktdW+m+ey++ Pbr026136.1 157 EDPEMYFFTPRDRKYPNGCRPSRTAADGFWKATGGNKNIRE-RGKTIGYKNTLVFFLGTQKKGTKTDWIMQEYTI 230 6669************************************9.999****************************86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.01E-12 | 55 | 113 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 40.878 | 60 | 259 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.4E-21 | 61 | 230 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 7.19E-29 | 155 | 257 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 509 aa Download sequence Send to blast |
MASPSPNPTY SHSAPPAAAA LDGQEGGQQY HGHQHEHHHG RHDKEDPKQM MRNERLVLGI 60 PPGWRFCPTD QELISFYLTR KLMNNIYHPQ PVNCRITDLH IYDFNPKKLA GLSLSLSLSL 120 SLSHTHTHAH THARTRTRHG CTTTMTCRVN EKYQLPEDPE MYFFTPRDRK YPNGCRPSRT 180 AADGFWKATG GNKNIRERGK TIGYKNTLVF FLGTQKKGTK TDWIMQEYTI RKYQPSDSPA 240 PGDRDTKLDK WVLCKIYEHK KSKKNRKNGR VSDDDEDEIN SSAALVLQGQ ESQDHPLLHK 300 PLSPPRNNMN HDGPSTSYQA GQYNMINNNH SAYALNNGLM SPLESIYGHG AHQDQVRHLA 360 PMLHLPGQQV MQPIPLVHST NVNNQDGHAF NGIATYYNQS TQYGFGDQSV PMYNNASQLN 420 NNGYPSSIIS VDTMDQYWLN EPLTDFDFSF DAINEPLTDF DFSFDAIGEG VPFGMPDVLP 480 LSWMPHINPV SQSTKADEKS STTPTDNH* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-35 | 58 | 262 | 15 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-35 | 58 | 262 | 15 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-35 | 58 | 262 | 15 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-35 | 58 | 262 | 15 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-34 | 58 | 262 | 18 | 171 | NAC domain-containing protein 19 |
3swm_B | 1e-34 | 58 | 262 | 18 | 171 | NAC domain-containing protein 19 |
3swm_C | 1e-34 | 58 | 262 | 18 | 171 | NAC domain-containing protein 19 |
3swm_D | 1e-34 | 58 | 262 | 18 | 171 | NAC domain-containing protein 19 |
3swp_A | 1e-34 | 58 | 262 | 18 | 171 | NAC domain-containing protein 19 |
3swp_B | 1e-34 | 58 | 262 | 18 | 171 | NAC domain-containing protein 19 |
3swp_C | 1e-34 | 58 | 262 | 18 | 171 | NAC domain-containing protein 19 |
3swp_D | 1e-34 | 58 | 262 | 18 | 171 | NAC domain-containing protein 19 |
4dul_A | 8e-35 | 58 | 262 | 15 | 168 | NAC domain-containing protein 19 |
4dul_B | 8e-35 | 58 | 262 | 15 | 168 | NAC domain-containing protein 19 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pbr026136.1 |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008392252.2 | 0.0 | NAC domain-containing protein 2-like | ||||
TrEMBL | A0A498I3F0 | 0.0 | A0A498I3F0_MALDO; Uncharacterized protein | ||||
STRING | XP_008392252.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF20511 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G15500.1 | 3e-36 | NAC domain containing protein 3 |