PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr025900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | NAC | ||||||||
Protein Properties | Length: 529aa MW: 58892.1 Da PI: 7.1626 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 58.1 | 3.1e-18 | 11 | 112 | 33 | 127 |
NAM 33 vikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfy.....kgrapkgektdW 121 +++ +d++k+ePw+Lpk + + k wy Fs d k++++ r +r+tk+g+Wk g +++v + + k+tL+f +gr++k++ t+W Pbr025900.1 11 FLPVIDVLKFEPWELPKrmfpESPYQAKAWYSFSWCDYKSNNSPRFKRKTKQGFWKMNGDQRDVGP--KYFTCKKRTLTFQkktfqEGRRSKSVTTSW 106 57889***********645553334788************************************88..55567777888886666579999******* PP NAM 122 vmheyr 127 mhey Pbr025900.1 107 KMHEYI 112 *****5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 22.999 | 1 | 140 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 6.41E-21 | 5 | 140 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.2E-6 | 31 | 111 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 529 aa Download sequence Send to blast |
MKSHNSQACL FLPVIDVLKF EPWELPKRMF PESPYQAKAW YSFSWCDYKS NNSPRFKRKT 60 KQGFWKMNGD QRDVGPKYFT CKKRTLTFQK KTFQEGRRSK SVTTSWKMHE YICIKPKRGS 120 SPHQARDQQR GFVLCVLKYK PADSKSNKKK LKATLIRGDL ADGTGNRGYI ASSSGDDEAA 180 TAAATNHMSP NTEEVLAYKQ LEHDLLGSGN QDDGEPGGGS SSDFNQSLRD MIQEFWWQLC 240 PPAGEYLNSH FPLPEPPQPH LPPQLGNAPE VCSGELVDPG TSGCSTYNTD NQAATMNHMV 300 SDTEEILAFK QLERDVFAGG NHDGGEPGSG ILTFGDGNDE TGGWKFSDFD DRAASDMFQE 360 LFPEMGEILN SSSQPLQPPQ PHQPPQPHQT QDYSPSSLQP PLHTVRVEEE DAMTTRVSKG 420 VFYTQEAESP CYQIGFLARD RIITVREAAE NCVVLHLPGK KTKTESLKQA TIGFFHWSIS 480 PKPSIKTPMG NGIILRYQVQ VLASYSGFRS IVVSSGNGVI QDLLRRGC* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr025900.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018498262.1 | 0.0 | PREDICTED: uncharacterized protein LOC103928005 isoform X1 | ||||
TrEMBL | A0A498KH05 | 0.0 | A0A498KH05_MALDO; Uncharacterized protein | ||||
STRING | XP_009335278.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF18876 | 2 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35580.3 | 8e-15 | NAC transcription factor-like 9 |