PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr025898.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NAC
Protein Properties Length: 411aa    MW: 46188.1 Da    PI: 5.4201
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr025898.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM91.61.3e-28241681128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..............kvkaeek.....ewyfFskrdkkyatgkrknratk 79 
                  l pGfrF Ptde l+++yLk+k++g++ ++ +vi+e+d++k+eP dLp+                  +++     ++    +++ + ++++  +   +
  Pbr025898.1  24 LLPGFRFYPTDELLISYYLKNKIQGTDSHFRHVIPEIDVCKYEPCDLPEleckgglpgfkplrP---GQTlppplRVVLLQPARLQVHQQHSLQPGHD 118
                  579***************************999***************5567777776654430...2233343344555555555444444444688 PP

          NAM  80 sgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                  +g+ k tgk++e+ ++ +++++g k++L+fy+gr pk++ktdWv+hey l
  Pbr025898.1 119 QGFYKITGKEREIRAEeSKAVIGKKRILTFYEGRVPKAKKTDWVVHEYYL 168
                  **************98566779**************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.11E-3219189IPR003441NAC domain
PROSITE profilePS5100534.23424191IPR003441NAC domain
PfamPF023658.6E-1426167IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MSSSSISSCM TTEEGDAVHV NVILLPGFRF YPTDELLISY YLKNKIQGTD SHFRHVIPEI  60
DVCKYEPCDL PELECKGGLP GFKPLRPGQT LPPPLRVVLL QPARLQVHQQ HSLQPGHDQG  120
FYKITGKERE IRAEESKAVI GKKRILTFYE GRVPKAKKTD WVVHEYYLSE IQVASKPTKQ  180
MDFVLCRLKN NSASYKKPKG YPIWGELADS GANSEDDQAV VSDVLTEPVQ HLGEKELEIS  240
QVSLSFDDGD DETGVWKFSD FDDPAMFLEL CAEMGEILNS PSQPLQQTPQ PHQPPHPHQP  300
SQPHQPQDYC PPTLQAPLHT LPGNVSYVYG DCTRRQSLIP DDTSYLEYKN NISTCDPNEQ  360
VSKLNGDHDR ATEEMFSEVK EAAEYCIALH LPQKKAKTES LKQATVGFFH *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr025898.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF9687657e-94HF968765.1 Malus x domestica metacontig of the Co-Gene region, cultivar Procats28, columnar allele.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028955738.11e-170NAC domain-containing protein 55-like
TrEMBLA0A498KH051e-163A0A498KH05_MALDO; Uncharacterized protein
STRINGXP_008359516.11e-162(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13710524
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.16e-28NAC 014