PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr025898.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | NAC | ||||||||
Protein Properties | Length: 411aa MW: 46188.1 Da PI: 5.4201 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 91.6 | 1.3e-28 | 24 | 168 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..............kvkaeek.....ewyfFskrdkkyatgkrknratk 79 l pGfrF Ptde l+++yLk+k++g++ ++ +vi+e+d++k+eP dLp+ +++ ++ +++ + ++++ + + Pbr025898.1 24 LLPGFRFYPTDELLISYYLKNKIQGTDSHFRHVIPEIDVCKYEPCDLPEleckgglpgfkplrP---GQTlppplRVVLLQPARLQVHQQHSLQPGHD 118 579***************************999***************5567777776654430...2233343344555555555444444444688 PP NAM 80 sgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +g+ k tgk++e+ ++ +++++g k++L+fy+gr pk++ktdWv+hey l Pbr025898.1 119 QGFYKITGKEREIRAEeSKAVIGKKRILTFYEGRVPKAKKTDWVVHEYYL 168 **************98566779**************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.11E-32 | 19 | 189 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 34.234 | 24 | 191 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.6E-14 | 26 | 167 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 411 aa Download sequence Send to blast |
MSSSSISSCM TTEEGDAVHV NVILLPGFRF YPTDELLISY YLKNKIQGTD SHFRHVIPEI 60 DVCKYEPCDL PELECKGGLP GFKPLRPGQT LPPPLRVVLL QPARLQVHQQ HSLQPGHDQG 120 FYKITGKERE IRAEESKAVI GKKRILTFYE GRVPKAKKTD WVVHEYYLSE IQVASKPTKQ 180 MDFVLCRLKN NSASYKKPKG YPIWGELADS GANSEDDQAV VSDVLTEPVQ HLGEKELEIS 240 QVSLSFDDGD DETGVWKFSD FDDPAMFLEL CAEMGEILNS PSQPLQQTPQ PHQPPHPHQP 300 SQPHQPQDYC PPTLQAPLHT LPGNVSYVYG DCTRRQSLIP DDTSYLEYKN NISTCDPNEQ 360 VSKLNGDHDR ATEEMFSEVK EAAEYCIALH LPQKKAKTES LKQATVGFFH * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr025898.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HF968765 | 7e-94 | HF968765.1 Malus x domestica metacontig of the Co-Gene region, cultivar Procats28, columnar allele. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028955738.1 | 1e-170 | NAC domain-containing protein 55-like | ||||
TrEMBL | A0A498KH05 | 1e-163 | A0A498KH05_MALDO; Uncharacterized protein | ||||
STRING | XP_008359516.1 | 1e-162 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13710 | 5 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33060.1 | 6e-28 | NAC 014 |