PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr025606.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 427aa    MW: 47221.9 Da    PI: 9.4679
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr025606.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.2e-051234123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C++C+k F r  nL+ H r H
  Pbr025606.1 12 FVCEICNKGFQRDQNLQLHRRGH 34
                 89*******************88 PP
2zf-C2H212.20.0005589111123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC++C+k +  +s+ k H +++
  Pbr025606.1  89 WKCEKCSKKYAVQSDWKAHSKVC 111
                  58*****************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.4E-51134IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.65E-71134No hitNo description
PROSITE profilePS5015710.9491234IPR007087Zinc finger, C2H2
SMARTSM003550.0171234IPR015880Zinc finger, C2H2-like
PfamPF121716.6E-51234IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002801434IPR007087Zinc finger, C2H2
SMARTSM003551105484IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.7E-477109IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.65E-784109No hitNo description
SMARTSM0035514089109IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MSPKSLMATN RFVCEICNKG FQRDQNLQLH RRGHNLPWKL KQRSKTEVIR KKVYVCPEKS  60
CVHHEPSRAL GDLTGIKKHF SRKHGEKKWK CEKCSKKYAV QSDWKAHSKV CGTREYRCDC  120
GTLFSRKDSF ITHRAFCDAL AAEQSARFCS APTTSNINPS FMNGSIANNT HKPQRIPHFI  180
PMFQPEFAGS DHLAANNHLS SNAFIPEMLQ TASMDMFGSS SSSQMQWLIN NNKFVEESSF  240
ANANNLSMSS PSLLRGVLKE DEESKGSFSE TISTTTSTSF YNNNNNKQNH HHHHQPMSAT  300
ALLQKAARMG STTSNNNNPA TTFNDTTLNF NDLVNSMSSS STQGATIEDG SLFLSNKHLM  360
MPAGAAAMTR QGTSEQSSLT RDFLGVGGGD AIFGGGVPFF QQELAKLASM SDLSQYTSTT  420
TSSRHQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-3485148365Zinc finger protein JACKDAW
5b3h_F4e-3485148365Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14051KQRSKTEVIRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr025606.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008359126.20.0zinc finger protein BALDIBIS
RefseqXP_008359127.20.0zinc finger protein BALDIBIS
RefseqXP_017184323.20.0zinc finger protein BALDIBIS
TrEMBLD9ZIU40.0D9ZIU4_MALDO; C2H2L domain class transcription factor
STRINGXP_009335059.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.12e-88C2H2-like zinc finger protein