PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr025605.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

NAC

Protein Properties

Length: 388aa MW: 43679.6 Da PI: 8.5175

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr025605.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	157	8.2e-49	15	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 lppGfrFhP+deel+v+yL++k+ + +l++ + i+e+d+yk++PwdLp+k+ +e ewyfFs+rd+ky++g+r+nra++ gyWka g dk++l++ ++ Pbr025605.1 15 LPPGFRFHPSDEELIVHYLRNKMISYPLPA-RLITEIDLYKYNPWDLPNKALFGEGEWYFFSPRDRKYPNGDRPNRAAALGYWKAAGGDKPILTScGS 111 79**************************.89***********88778999*********************************99888 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 el+g+kk Lvfy+grapkg+kt+W+m+eyrl Pbr025605.1 112 ELIGVKKALVFYTGRAPKGVKTEWLMNEYRL 142 99*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-58	12	152	IPR003441	NAC domain
PROSITE profile	PS51005	55.768	15	209	IPR003441	NAC domain
Pfam	PF02365	1.8E-24	16	142	IPR003441	NAC domain
SuperFamily	SSF101941	1.57E-58	197	207	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MEKEPAFTTS STLQLPPGFR FHPSDEELIV HYLRNKMISY PLPARLITEI DLYKYNPWDL 60 PNKALFGEGE WYFFSPRDRK YPNGDRPNRA AALGYWKAAG GDKPILTSCG SELIGVKKAL 120 VFYTGRAPKG VKTEWLMNEY RLLDSTINPS RSKGSMRSHH ALTTSRANLA IPLEFNILDL 180 ALYYNNCAFK SETQIVELDD WVLCRVQQRG NTTKNTCNPQ DIYNTESWRC LPKAGPTQPT 240 DPIHRADLIT DFLYKDCRLL AFMLAGQAPS PIETNSSASF QGRKDSCEVG SNNKVKSTIS 300 VSSSGISSTL KRKIREENTK ENLFPLITLE SKNKDGNVLP GKRLAADNVV NCYIPNHLQN 360 DIPKANPTVP ANFEEFDEMS FLATYFK*

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MEKEPAFTTS STLQLPPGFR FHPSDEELIV HYLRNKMISY PLPARLITEI DLYKYNPWDL  60
PNKALFGEGE WYFFSPRDRK YPNGDRPNRA AALGYWKAAG GDKPILTSCG SELIGVKKAL  120
VFYTGRAPKG VKTEWLMNEY RLLDSTINPS RSKGSMRSHH ALTTSRANLA IPLEFNILDL  180
ALYYNNCAFK SETQIVELDD WVLCRVQQRG NTTKNTCNPQ DIYNTESWRC LPKAGPTQPT  240
DPIHRADLIT DFLYKDCRLL AFMLAGQAPS PIETNSSASF QGRKDSCEVG SNNKVKSTIS  300
VSSSGISSTL KRKIREENTK ENLFPLITLE SKNKDGNVLP GKRLAADNVV NCYIPNHLQN  360
DIPKANPTVP ANFEEFDEMS FLATYFK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-61	11	215	13	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-61	11	215	13	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-61	11	215	13	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-61	11	215	13	171	NO APICAL MERISTEM PROTEIN
4dul_A	2e-61	11	215	13	171	NAC domain-containing protein 19
4dul_B	2e-61	11	215	13	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene coding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1. {ECO:0000269\|PubMed:17124321, ECO:0000269\|PubMed:22278768}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr025605.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009335094.1	0.0	PREDICTED: NAC domain-containing protein 2-like
Swissprot	A0SPJ6	2e-68	NAMB2_TRITD; NAC transcription factor NAM-B2
TrEMBL	A0A498IP11	0.0	A0A498IP11_MALDO; Uncharacterized protein
STRING	XP_009335094.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2416	29	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	4e-70	NAC domain containing protein 25

Publications ? help Back to Top
Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat. Science, 2006. 314(5803): p. 1298-301 [PMID:17124321]