PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr025407.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family CPP
Protein Properties Length: 898aa    MW: 97498 Da    PI: 7.2919
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr025407.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR49.77.4e-16470506339
          TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                  +k+CnCkkskClk+YC+Cfaag++C+e+C C++C+N 
  Pbr025407.1 470 CKRCNCKKSKCLKLYCDCFAAGVYCAETCACQGCFNI 506
                  79**********************************6 PP
2TCR50.34.6e-16547585139
          TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                  ++k+gCnCkks ClkkYCeC++a++ Cs+ C+C++CkN 
  Pbr025407.1 547 RHKRGCNCKKSMCLKKYCECYQANVGCSSGCRCDGCKNV 585
                  589***********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.2E-15468509IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.39469587IPR005172CRC domain
PfamPF036381.4E-11471505IPR005172CRC domain
SMARTSM011146.8E-17547588IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.3E-11549584IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 898 aa     Download sequence    Send to blast
MDSPEIPKIK ANTSPSSDSP PVQESPVFSY ISNLSPIQPV KASHAVQGFP GLSSPPLVFT  60
SPRINTLRET SFLKRPQHPQ LSSVGKTKAH DEAKKFVDVP VDSKKHITQL QMGLITDTQD  120
CETNSSSEGV DEYLADPMEM DCTNSCQSVN PCLKESINAS ESEAPPEKAK EDLDGKQFDP  180
KPVKNKVHSD GELPSSECPK VGSGLSIDNA FNGEYHLGFH NQGIGGRQQD DCDHNPPSPP  240
GRLQIGQVYE DCTEKVGGTS KGMIGNMILH APNKAKNDQG GMHRRCLQFE EAPPCATGKG  300
DSSSVEKVNN SEPPASTAEL EIVQVPNAAT SKRQMGASLP PRYGGSSPLT VPKPSGIGLH  360
LNSIVNAAPV VRGATTIKLA DHYIGVQVMK SSSVVNHHLP ENVRDETENS IATSSSITQS  420
PDTVEFERHG SPPEKSKLDS QNVDSYMELN QSSSQKKRKK TPSSKDSDGC KRCNCKKSKC  480
LKLYCDCFAA GVYCAETCAC QGCFNIPDYE DTVLETRQQI EARNPLAFAP KIVQLEEEIQ  540
FTPASARHKR GCNCKKSMCL KKYCECYQAN VGCSSGCRCD GCKNVYGRKG DFVPIEHGVI  600
KDTISDKAGK ETFDEKLEMV ATKKDILSTD LYDSHNHTPL TPSFHCSDHA NNIPKSPCLP  660
TSYLRSPESD LTIISSYEKS TRSPLRNSKT GGILLETSKE LSNMGYYHWR EDYDNIGVAH  720
TFSTRYDAAP TTCHITPLSD LYSKASASST SSRSDWKNAS QAQLCPGSQG LSSSSSLHWC  780
SSPVTPMARL GGTKSSQGLD FDNGLYDFLQ EETPEILKDS SNPIRSVKVS SPNKKRVSPP  840
HNHNHELGAS SSGSLRSGRK FILKAVPSFP PLTPCSNSEG SNIIQNTSNL HDKGRKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-1947358514121Protein lin-54 homolog
5fd3_B1e-1947358514121Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1455459KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr025407.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ0101655e-35AJ010165.1 Glycine max mRNA for cysteine-rich polycomb-like protein (gpp1 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009334766.10.0PREDICTED: protein tesmin/TSO1-like CXC 2
TrEMBLA0A498HNJ90.0A0A498HNJ9_MALDO; Uncharacterized protein
STRINGXP_009334766.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85652841
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.14e-76Tesmin/TSO1-like CXC domain-containing protein