PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr025102.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

LBD

Protein Properties

Length: 306aa MW: 33223.4 Da PI: 8.157

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr025102.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	140.2	6.7e-44	13	112	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrrkC+++Cv+apyfp ++p++fanvhk+FGasnv k+l++l+ ++r+da++sl+yeAear+rdPvyG+vg+i+ lqq+l+q++a+l +k Pbr025102.1 13 PCAACKFLRRKCTPECVFAPYFPPDNPQRFANVHKVFGASNVAKILNELSASQRDDAVNSLAYEAEARLRDPVYGCVGLISLLQQRLKQVQADLFNAK 110 7********************************************************************************************98888 PP DUF260 99 ee 100 +e Pbr025102.1 111 KE 112 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.851	12	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.5E-43	13	109	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MSSSSMSSSS NSPCAACKFL RRKCTPECVF APYFPPDNPQ RFANVHKVFG ASNVAKILNE 60 LSASQRDDAV NSLAYEAEAR LRDPVYGCVG LISLLQQRLK QVQADLFNAK KELATYIGPQ 120 AMLSILQPPT YMAQQLQGNA SSSAGPPYSM SPMMGIPTAA ASGQLMVRDP QQQQQHQQIF 180 EAQQLAAAVA AREQQEMFRS FDQSKQAMQQ QAQDHLSGFT QMAGAVGNAV LPSLALGFDS 240 GPYHQIQPQH PHHNHRHQLQ LQAQLLLQTQ QPQGHHQAQQ SQQPQLQAKP VPGEEGGGRS 300 VGPSC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-49	3	116	1	114	LOB family transfactor Ramosa2.1
5ly0_B	1e-49	3	116	1	114	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr025102.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009366715.1	0.0	PREDICTED: LOB domain-containing protein 36-like
Refseq	XP_009366720.1	0.0	PREDICTED: LOB domain-containing protein 36-like
Swissprot	Q9FKZ3	5e-73	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	M5W6J8	1e-130	M5W6J8_PRUPE; Uncharacterized protein
STRING	XP_009366715.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2353	34	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	5e-71	ASYMMETRIC LEAVES 2-like 1

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]