PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr024939.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 779aa    MW: 86294 Da    PI: 7.4483
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr024939.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.47.9e-095294347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +WT +E+e +  a +q G++ +++I r+++  +   q++++++ +
      Pbr024939.1 52 AWTHQEEESFFSALRQVGKN-FEKITRRVQ-SKNKDQVRHYYYRL 94
                     6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.99E-104399IPR009057Homeodomain-like
PROSITE profilePS5129313.4334899IPR017884SANT domain
SMARTSM007175.1E-64997IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-55197IPR009057Homeodomain-like
CDDcd001678.31E-65295No hitNo description
PfamPF002491.9E-65294IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 779 aa     Download sequence    Send to blast
MQIGSTVIMD SEVHPHQGSF LVQDGGPVVA PTISTHVAQQ QPMKKTTRQW AAWTHQEEES  60
FFSALRQVGK NFEKITRRVQ SKNKDQVRHY YYRLVRRMNK LLGPELYLDS KNSKDTNAAM  120
LRWWSLLEKY SCKASKLHLK PRRFKIFIEA LEHQLLKDRK KSVRKRPSQG ENCPPNAPST  180
VSNQNRPSGH DNRTVKLVLV DSHNIQKLGP GKASMKRNVN IGVNRSNKGD SSTMKPARQR  240
RKPGAVSSVA YKKWEKAAIA GVSLVADAAE HLERAATDKE VQQQDRSTEG QSCSVPVGTV  300
LSPMPTFPQK IYAENNCMKL KLQLFPIDDV TRRALEIDKH NPHLELTLST RKKISSVLEH  360
LNRKWGNSNV ASGELMLFPY SVQRENLMGY PRWAQDSVVS AADVYSTIGS PPVFRLRYGW  420
FSNTELRSVE FQAPIASCSI QGEHMNVEKR NEQIVDSTPI SHLSTNNQSV DKNSLALTST  480
DEPNEISGYV SSSPNNVGAP TEIRTLHRKE AGDQNTSVHR GDLDGTRLIN GNSLSSGDWA  540
DSLTNISVGD LLVGVSHDLD SNRIDPPAAE TSQCLQQIPF SCDSFDAVIA AHIARQDKMG  600
CQHIMESHVS SIWDAEETCD GFSFPKNPVF CQEVPSLPGV APPGPCKQTV CTSSAGSDLM  660
VEDIPVVDRP IDPPQGDRVD QCQPDLHIES SVKDFNALAD IYWPESLGPL DLEMPSSKYN  720
NDDFMLSDSL SGLNRLIASS LDAFQNCSFF GVNKKEATPS AEGRETASFS DFKIGNGV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr024939.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009334660.10.0PREDICTED: TSL-kinase interacting protein 1-like
SwissprotQ8LJT80.0TKI1_ARATH; TSL-kinase interacting protein 1
TrEMBLA0A498IF060.0A0A498IF06_MALDO; Uncharacterized protein
STRINGXP_009334660.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98832531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.20.0TSL-kinase interacting protein 1