PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr024486.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

LBD

Protein Properties

Length: 173aa MW: 20036 Da PI: 6.625

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr024486.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	122.2	2.9e-38	15	114	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaC++lrr+C +C lapyfp e+ kfa vh++FGasnv+k+++ ++e++reda++s+vyeA ar+rdPvyG+++ i++lq+ +e+l+++l+++k Pbr024486.1 15 PCAACRMLRRRCDINCSLAPYFPIEEIDKFAGVHRVFGASNVIKMIQMVEETRREDAVKSIVYEATARIRDPVYGSTAAIFHLQKMIEELRSQLQTIK 112 7*********************************************************************************************9998 PP DUF260 99 ee 100 ++ Pbr024486.1 113 SQ 114 87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.698	14	115	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.7E-38	15	112	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MDARITPMHA RVHQPCAACR MLRRRCDINC SLAPYFPIEE IDKFAGVHRV FGASNVIKMI 60 QMVEETRRED AVKSIVYEAT ARIRDPVYGS TAAIFHLQKM IEELRSQLQT IKSQVLELQQ 120 HRDQLLGILM NNVHSLDLFS DMHDPMFGES SKVQEDTVWD LEPRDERRQE RI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-34	6	116	2	112	LOB family transfactor Ramosa2.1
5ly0_B	5e-34	6	116	2	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr024486.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018498073.1	1e-126	PREDICTED: LOB domain-containing protein 1-like
Swissprot	Q9LQR0	3e-41	LBD1_ARATH; LOB domain-containing protein 1
Swissprot	Q9SK08	9e-41	LBD11_ARATH; LOB domain-containing protein 11
TrEMBL	A0A498JAZ8	1e-118	A0A498JAZ8_MALDO; Uncharacterized protein
STRING	XP_008233120.1	1e-89	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14068	19	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	1e-43	LOB domain-containing protein 1