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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pbr024467.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family |
ERF |
Protein Properties |
Length: 231aa MW: 24972.9 Da PI: 8.5911 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pbr024467.1 | genome | CPETR | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 62.7 | 7.9e-20 | 30 | 79 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
+y+GVr ++ +gr++AeIrd ++ ++r++lg+f++ae+Aa+a++aa++ l+g
Pbr024467.1 30 RYRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEDAARAYDAAARILRG 79
69*******.**********883....5***********************9998 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009414 | Biological Process | response to water deprivation |
GO:0009737 | Biological Process | response to abscisic acid |
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 231 aa
Download sequence Send
to blast |
MRRGRGAATR PAAPPAEPTG SRPCIGKEVR YRGVRKRPWG RFAAEIRDPW KKTRVWLGTF 60 DSAEDAARAY DAAARILRGP KAKTNFQISC AYPSFYNNPT DPAIEAKLFG SGYGFQDHPA 120 VDPQRPASSS LSSTVESFSG PRPPLQSMTV AAELTRRKRQ PRTPPVVPED CHSDCDSSSS 180 VVEDDGDFVA SSSFRKAPLP FDLNFPPLDV DGESGGGVDG QDLRCTALCL *
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Functional Description ? help
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Source |
Description |
UniProt | Involved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | GU732429 | 0.0 | GU732429.1 Malus x domestica AP2 domain class transcription factor (AP2D5) mRNA, complete cds. |
Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] - Galuschka C,Schindler M,Bülow L,Hehl R
AthaMap web tools for the analysis and identification of co-regulated genes. Nucleic Acids Res., 2007. 35(Database issue): p. D857-62 [PMID:17148485] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Giuntoli B,Perata P
Group VII Ethylene Response Factors in Arabidopsis: Regulation and Physiological Roles. Plant Physiol., 2018. 176(2): p. 1143-1155 [PMID:29269576]
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