PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr024323.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 306aa    MW: 33121.1 Da    PI: 10.4705
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr024323.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding347e-11555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l+ +v ++G g W+tI            R+  ++k++w++
      Pbr024323.1  5 KQKWTAEEEAALKAGVLKHGAGKWRTILTDPEfntilHLRSNVDLKDKWRN 55
                     79***********************************88**********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.803161IPR017930Myb domain
SuperFamilySSF466896.95E-15267IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-12456IPR009057Homeodomain-like
SMARTSM007178.4E-6459IPR001005SANT/Myb domain
PfamPF002492.2E-7555IPR001005SANT/Myb domain
CDDcd116606.37E-17657No hitNo description
PROSITE profilePS5150423.952119190IPR005818Linker histone H1/H5, domain H15
SMARTSM005261.4E-15120185IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467852.83E-17120199IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.4E-15122194IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005382.4E-10127183IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MGAPKQKWTA EEEAALKAGV LKHGAGKWRT ILTDPEFNTI LHLRSNVDLK DKWRNINVTA  60
IWGSRQKAKL ALKRNLPTPK HDNNPLAVST VIQSHEEVVD AKPLASSGGK SQTIESKDSK  120
QPIARLDHLI LEAITNLKEP GGSDRAAIAM HIEEQYWAPP KLKKLLSSKL KNMTATGKLI  180
KVKHRYRIPL SSATSEKRRS SSALLLEGKQ KDSSRKDKSD INILTKSQVD ADLTKMRSMT  240
AQEAAAAAAQ AVAEAEAAIA AAEEAAREAE AAEAEAEAAQ VFAKAAMKAL KCRKIGKVLL  300
SNFAS*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00626PBMTransfer from PK06103.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr024323.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0744770.0DQ074477.1 Malus x domestica MYBR6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018502609.10.0PREDICTED: telomere repeat-binding factor 1 isoform X1
RefseqXP_018502610.10.0PREDICTED: telomere repeat-binding factor 1 isoform X1
SwissprotQ8VWK41e-83TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLA0A498I0M80.0A0A498I0M8_MALDO; Uncharacterized protein
STRINGXP_008341414.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145333101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.32e-70telomere repeat binding factor 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Features of Arabidopsis genes and genome discovered using full-length cDNAs.
    Plant Mol. Biol., 2006. 60(1): p. 69-85
    [PMID:16463100]
  2. Schrumpfová PP, et al.
    Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase.
    Plant J., 2014. 77(5): p. 770-81
    [PMID:24397874]
  3. Liang SC, et al.
    Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.
    PLoS Genet., 2015. 11(12): p. e1005660
    [PMID:26642436]
  4. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]
  5. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]