 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Pbr023949.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
|
| Family |
AP2 |
| Protein Properties |
Length: 448aa MW: 48712.2 Da PI: 8.6049 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pbr023949.1 | genome | CPETR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 53.9 | 4.3e-17 | 139 | 188 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g
Pbr023949.1 139 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHSAARAYDRAAIKFRG 188
78*******************......55************************997 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 448 aa
Download sequence Send
to blast |
MEVEDSGTSN SSVVNADEAP TPGNAGDEDS TNNTTSSFMF DILRREKDGL CISGDGDQTQ 60
SLQFVTRPLF PVAGYGGGGK EGADCGLGLS SSSLSTARTH WLNLSFAESG SQTQAELRVV 120
QQKKQPPRKS RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC GKQVYLGGFD TAHSAARAYD 180
RAAIKFRGID ADINFNVGDY EEDMKLLGHL NKEEFVHVLR RQTTGASRGN SKYRGVAAAR 240
LPECGAKWED RTGQVPRKKV FEKEAIKCRT GREAVTNFDA SIYEGEMVLN ASVEGSGHNL 300
DLSLGISQPC STGQKRIGKL GDFQFPKERL MVNGFSSAAM GQLPHVLTKC PALYPGFVQR 360
HGEITSDHNR LQPISSPRYT NWACQVYGNS NNVNPMQVFS IAASSGFPSS TATTPPRPGS 420
LPPNLQDSNA SAYNLGCLPF PAPSNIY*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | GU732436 | 0.0 | GU732436.1 Malus x domestica AP2 domain class transcription factor (AP2D12) mRNA, complete cds. |
