PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr023747.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WRKY
Protein Properties Length: 449aa    MW: 48649.3 Da    PI: 8.5884
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr023747.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.55.6e-33194250360
                  -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                  DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d+++ ei+Y+geHnh+k
  Pbr023747.1 194 DGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSL-DGQIAEIVYKGEHNHSK 250
                  9***************************************.***************85 PP
2WRKY36.21.2e-11403434332
                  -SS-EEEEEEE--TT-SS-E.EEEEE-ST.T- CS
         WRKY   3 DgynWrKYGqKevkgsefpr.sYYrCtsa.gC 32 
                  Dg++WrKYGqK+vkg+++pr s   C+s+  C
  Pbr023747.1 403 DGFRWRKYGQKVVKGNPYPRlSCLSCSSSaVC 434
                  9******************9677888877556 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-30184251IPR003657WRKY domain
SuperFamilySSF1182903.79E-26189251IPR003657WRKY domain
SMARTSM007743.8E-37192250IPR003657WRKY domain
PfamPF031061.4E-25194248IPR003657WRKY domain
PROSITE profilePS5081123.686194251IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.0E-12387434IPR003657WRKY domain
SuperFamilySSF1182903.92E-9395429IPR003657WRKY domain
PROSITE profilePS5081113.93396434IPR003657WRKY domain
SMARTSM007745.2E-5401445IPR003657WRKY domain
PfamPF031064.3E-8403435IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MDIKEAERVV IAKPVASRPT CSTFRSFTEL LAGAIDASPS NVSSETAVPA IRPKTVRFKP  60
MVNHAVPGLV SSQAHISGAA HSHSSEQVSK SGSRSTVIYK PLAKVVSRAT VSVLANMGNF  120
NTSHQSTQSS VNVGVLHPNQ DKCFRSQSSN LHHNDPSCAE TNQTTEPLKI ASQNMEEDLK  180
LIPSTANTDR PSYDGYNWRK YGQKQVKGSE YPRSYYKCTH PNCPVKKKVE RSLDGQIAEI  240
VYKGEHNHSK PQPPKRSSSG TQGLGIPFDG TDQDTNNRLL NSHLNERNEG SEGRVEDQNE  300
VGLPVQSYQT KAPLPYDPHA TGGITARGAT PDNSCGRSGE CEEASKGLEA EDYEPRSKRR  360
LDEIRGLGLA MHALVLKAGI SGEGVQDPRV VVQNSVESDM TGDGFRWRKY GQKVVKGNPY  420
PRLSCLSCSS SAVCAFLTSV VGQKILCD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-181942511674WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr023747.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0201090.0KJ020109.1 Malus hybrid cultivar TTG2 protein (TTG2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009333616.10.0PREDICTED: WRKY transcription factor 44-like
RefseqXP_018497877.10.0PREDICTED: WRKY transcription factor 44-like
TrEMBLA0A498K1M80.0A0A498K1M8_MALDO; Uncharacterized protein
STRINGXP_009333616.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67903450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.14e-79WRKY family protein