PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr023394.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 754aa    MW: 82228.3 Da    PI: 8.1078
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr023394.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.0012686708223
                  EETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                  +Cp Cg  Fs+  +L+ H  + H
  Pbr023394.1 686 VCPQCGAKFSSVTTLVDHVEKvH 708
                  6*****************99888 PP
2zf-C2H214.30.00012726747323
                  ETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                  Cp+C+k F+++  L+ H  + H
  Pbr023394.1 726 CPKCSKGFRDPVALVEHVERdH 747
                  *****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.160.20.102.3E-12881476IPR012334Pectin lyase fold
SuperFamilySSF511261.05E-12385459IPR011050Pectin lyase fold/virulence factor
PfamPF002953.1E-103121447IPR000743Glycoside hydrolase, family 28
SMARTSM00710440243269IPR006626Parallel beta-helix repeat
SMARTSM007101900270291IPR006626Parallel beta-helix repeat
PROSITE patternPS005020300313IPR000743Glycoside hydrolase, family 28
SMARTSM00710130323344IPR006626Parallel beta-helix repeat
SMARTSM007101100352373IPR006626Parallel beta-helix repeat
PROSITE profilePS510398.357450516IPR000058Zinc finger, AN1-type
SuperFamilySSF1183108.11E-11451509No hitNo description
PfamPF014281.7E-12473509IPR000058Zinc finger, AN1-type
SMARTSM001541.8E-5473512IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.106.6E-9477509IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.102.4E-10551606IPR000058Zinc finger, AN1-type
SuperFamilySSF1183104.51E-8553603No hitNo description
PROSITE profilePS510397.843558606IPR000058Zinc finger, AN1-type
PfamPF014281.3E-7561601IPR000058Zinc finger, AN1-type
SMARTSM001540.13561602IPR000058Zinc finger, AN1-type
PROSITE profilePS501579.058685708IPR007087Zinc finger, C2H2
SMARTSM003550.042685708IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280687708IPR007087Zinc finger, C2H2
SMARTSM003557.1724747IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.829724752IPR007087Zinc finger, C2H2
PROSITE patternPS000280726747IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0009901Biological Processanther dehiscence
GO:0010047Biological Processfruit dehiscence
GO:0004650Molecular Functionpolygalacturonase activity
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 754 aa     Download sequence    Send to blast
MAPQKNELIL FIIITLPSFV LCYSSLHEKQ LIDKNVDEAS EFDSKAYPSY LNTIDDGSDL  60
FKGLIKESAD VLCLRSFDKV DSSTSSSAET VSVYDFGAED DGETDDTKAF EKAWKVACSS  120
KEAVLVVPKK TYRIKPIRFS GPCKSQLTVQ ILGTLIASDD RSDFSKDGRH WLIFDSVSNL  180
VVEGGGAING NGKNWWQNSC KTDKSKPCKD APTALTFYKC KNLMVRNLKI QDAQQIHVSF  240
QKCMNVEVSN LSITAPEKSP NTDGIHVTDT QNILITSCVT ATGDDCLSIV NGSKLVQASN  300
ITCGPGHGIS IGSLGSGNST AYVSDITVNG AKLYGTTNGV RIKTWQGGSG SASNIRFQNI  360
EMHNVTNPIL IDQYYCDRKK PCKEQRSAVE VKNVVYKNIK GTSASDIAIK FDCSKSFPCL  420
GIILQDINLQ HEGRKTAKAL CNNVNVTSIG VVCPLCPKLE GQYETCQYLG RHCYVAECQQ  480
IDFLPFTCDS CHQVFCLEHR SYIKHNCPKG DRKNVTVVIC PLCAKGVHLI PDEDPNITWE  540
RHVNTDCDPS NYEKATKKKK CPVPGCKEIL TFSNTIKCRD CTVDHCLKHR FGLDHKCPGP  600
KKPEAGFPFL GYLSRSRKEV SKPNHAPAAS SPNWSSFLTA ASSFRASAEA SVAKLSSELS  660
QKWQIAKDGT GQSSSSSGSR NGQGEVCPQC GAKFSSVTTL VDHVEKVHEK GGNRAAAVKK  720
VTIDACPKCS KGFRDPVALV EHVERDHGGT SRA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4c2l_A1e-239845323382ENDO-XYLOGALACTURONAN HYDROLASE A
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs in concert with the pectinesterase, in the ripening process. Is involved in cell wall metabolism, specifically in polyuronide degradation.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr023394.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009379633.10.0PREDICTED: polygalacturonase isoform X1
SwissprotP353360.0PGLR_ACTDE; Polygalacturonase
TrEMBLA0A498ICB20.0A0A498ICB2_MALDO; Uncharacterized protein
STRINGXP_009379633.10.0(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-114C2H2 family protein
Publications ? help Back to Top
  1. Atkinson RG,Gardner RC
    A polygalacturonase gene from kiwifruit (Actinidia deliciosa).
    Plant Physiol., 1993. 103(2): p. 669-70
    [PMID:8029342]