PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr023383.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 207aa    MW: 23064.2 Da    PI: 6.3871
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr023383.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.000233658123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C  C++ F++   L  H++ H
  Pbr023383.1 36 YECVFCKRGFTTAQALGGHMNIH 58
                 99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.35E-63463No hitNo description
Gene3DG3DSA:3.30.160.601.5E-43462IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.4273663IPR007087Zinc finger, C2H2
PROSITE patternPS0002803858IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MKSNHHDHQD SKTSSTDEEA DHQPDANDGM GTGRSYECVF CKRGFTTAQA LGGHMNIHRK  60
ERAKTRPSSA PTSLASSIST AVEDQNHPRA ALYRAIQSYR PGPPHYFIAL PDDHMNYRTD  120
VPASNTSGVL RPPHANHISD EDLCARNYIP RHRNLLRDDH RDWRSGSSLS LGMGQPSDDY  180
KERVINGGLE ETDDELDLEL RLGHDP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr023383.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ4184740.0HQ418474.1 Malus x domestica transcriptional regulator superman (SUP9b) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009367716.11e-153PREDICTED: transcriptional regulator SUPERMAN-like
RefseqXP_009379293.11e-153PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLF6KKG11e-145F6KKG1_MALDO; Transcriptional regulator superman
STRINGXP_009367716.11e-152(Pyrus x bretschneideri)
STRINGXP_009379293.11e-152(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16863073
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.15e-13zinc-finger protein 10