PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr023212.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | AP2 | ||||||||
Protein Properties | Length: 554aa MW: 60810.6 Da PI: 6.4651 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.6 | 2.3e-11 | 169 | 225 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g Pbr023212.1 169 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 225 57*******************5444.2455536655.779999**************98 PP | |||||||
2 | AP2 | 47.1 | 6.1e-15 | 270 | 319 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g Pbr023212.1 270 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 319 9***************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 7.85E-15 | 169 | 235 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.67E-20 | 169 | 235 | No hit | No description |
Pfam | PF00847 | 9.3E-9 | 169 | 225 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.2E-23 | 170 | 239 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.504 | 170 | 233 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-12 | 170 | 234 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-6 | 171 | 182 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.43E-18 | 268 | 329 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.25E-24 | 268 | 329 | No hit | No description |
PROSITE profile | PS51032 | 19.375 | 269 | 327 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.6E-33 | 269 | 333 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.1E-18 | 269 | 328 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-9 | 270 | 319 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-6 | 309 | 329 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 554 aa Download sequence Send to blast |
MGSMNSNNWL SFPLSPPNSS LPSQLHPSHS HQFSLGLGSD TMDNPFQNQE WNLINTQGSD 60 EVPKVADFLG VSKSENHSDL VAFNDIQAND SVSDYLFPSN NIVSVQNTVV DNSSNFDFQE 120 KSNSLQSLTL SMGSGKGSSA CETSTDNTSI TTVEAPPRRT LDTFGQRTSI YRGVTRHRWT 180 GRYEAHLWDN SCRREGQSRK GRQGGYDKEE KAARAYDLAA LKYWGTSTTT NFPISNYEKE 240 VEEMKNMTRQ EFVAAIRRKS SGFSRGASMY RGVTRHHQHG RWQARIGRVA GNKDLYLGTF 300 STEEEAAEAY DIAAIKFRGL NAVTNFDMSR YDVKSILESN TLPIGGGAAK RLKEAQALES 360 SRKREEMIAL GSTFQYAAAG AASSSTSASR NFQAYSLLQP QSTFDQNVQS QPLLTLQNHD 420 ISQYTHHHDP SSYQNYIQTQ LQLHQAQQQY HPTQQFYNSY GLQSTHPALL QGLMDMGSSS 480 GVMDHNNGSS SGSYSAGGYL GNIGIGLASN STANNGVGLA GELALVSAEE LALVKVDYDM 540 PNGGGYGYFY NVE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs). {ECO:0000250, ECO:0000269|PubMed:15454085, ECO:0000269|PubMed:15635403, ECO:0000269|PubMed:16424342, ECO:0000269|PubMed:20190735}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr023212.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin accumulation. {ECO:0000269|PubMed:15454085}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018507988.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor PLT2 isoform X1 | ||||
Swissprot | Q5YGP7 | 0.0 | PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2 | ||||
TrEMBL | A0A498ITD7 | 0.0 | A0A498ITD7_MALDO; Uncharacterized protein | ||||
STRING | XP_008352496.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4942 | 31 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51190.1 | 0.0 | AP2 family protein |