PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr022012.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 303aa    MW: 34167.4 Da    PI: 5.7428
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr022012.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.53.5e-28958150
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                 krien++nrqvtfskRrng++KKA+ELSvLCd++va+i+fss+g+l  +s
  Pbr022012.1  9 KRIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSSSGRLSLFS 58
                 79*******************************************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.5E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.277161IPR002100Transcription factor, MADS-box
CDDcd002651.25E-37278No hitNo description
SuperFamilySSF554557.06E-30278IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.5E-251055IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-263859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MGRVKLQIKR IENTTNRQVT FSKRRNGLIK KAYELSVLCD VDVALIMFSS SGRLSLFSGN  60
KSIEETLARY INLPANQRGR PISGTDSDQL EEIQQDIVCC KSQLEEMGNR LRIFEAEDLS  120
EIRTLHDAEY REQILEETLK RLRVRKQVLE EYDSSATILQ LPTATTNIHE LVTGSPHNIL  180
VDWLLQGDPQ VQIVNFLNSN GSLPLRIRDQ PAERRFDAIA SQSALVSGQN RSVDEHRSTG  240
KGLEDDNNGL QRQELGQVID VNFSAWKDFY PTASSSGRGL YMSSQFNPPP SILHPNQDQN  300
QL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-18195190Myocyte-specific enhancer factor 2B
1tqe_Q3e-18195190Myocyte-specific enhancer factor 2B
1tqe_R3e-18195190Myocyte-specific enhancer factor 2B
1tqe_S3e-18195190Myocyte-specific enhancer factor 2B
6c9l_A3e-18195190Myocyte-specific enhancer factor 2B
6c9l_B3e-18195190Myocyte-specific enhancer factor 2B
6c9l_C3e-18195190Myocyte-specific enhancer factor 2B
6c9l_D3e-18195190Myocyte-specific enhancer factor 2B
6c9l_E3e-18195190Myocyte-specific enhancer factor 2B
6c9l_F3e-18195190Myocyte-specific enhancer factor 2B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr022012.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009354139.10.0PREDICTED: agamous-like MADS-box protein AGL104 isoform X1
RefseqXP_009354140.10.0PREDICTED: agamous-like MADS-box protein AGL104 isoform X1
TrEMBLA0A498J9060.0A0A498J906_MALDO; Uncharacterized protein
STRINGXP_009354138.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF136651922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.12e-29AGAMOUS-like 104