PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr021938.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WRKY
Protein Properties Length: 273aa    MW: 30352.3 Da    PI: 9.8797
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr021938.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY33.96.3e-11159180122
                  ---SS-EEEEEEE--TT-SS-E CS
         WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                  ldDgy+WrKYGqK+vk++++pr
  Pbr021938.1 159 LDDGYKWRKYGQKVVKNTQHPR 180
                  59*******************9 PP
2WRKY52.31.1e-162142512259
                  EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY  22 rsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                   sYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+
  Pbr021938.1 214 MSYYRCTMDNCRVKKRVERLAEDPRMVITTYEGRHVHS 251
                  59***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.9E-30144179IPR003657WRKY domain
SuperFamilySSF1182902.22E-9152181IPR003657WRKY domain
PROSITE profilePS5081121.804154253IPR003657WRKY domain
SMARTSM007742.9E-32159252IPR003657WRKY domain
PfamPF031063.0E-7160181IPR003657WRKY domain
PfamPF031066.3E-11212250IPR003657WRKY domain
SuperFamilySSF1182901.7E-12214252IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.9E-30214251IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MDFFPFPQNL TFSSLPLVGH QSLKGGLSTA SIASDDAPST TTLSETLVPR PSLTPPLRHK  60
QDHNITTSSE FGGGGGGGGG GGPHGHLLSL QRSTANLWAW GDVSDEYCLN SKRSSGGDDS  120
HHPYLGGLSA MKMKKMKAIR RKVREPRFCF KTLSDVDVLD DGYKWRKYGQ KVVKNTQHPR  180
LLQARLGAGD LMVNVALAKA ISKKNYNYYY SSKMSYYRCT MDNCRVKKRV ERLAEDPRMV  240
ITTYEGRHVH SPSHDLDDQD SRSPSHLNNF FW*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr021938.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009354059.11e-162PREDICTED: probable WRKY transcription factor 13
RefseqXP_009354060.11e-162PREDICTED: probable WRKY transcription factor 13
SwissprotQ9SVB75e-53WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBLA0A498HYP51e-158A0A498HYP5_MALDO; Uncharacterized protein
STRINGXP_009354059.11e-162(Pyrus x bretschneideri)
STRINGXP_009354060.11e-162(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40793361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.11e-47WRKY DNA-binding protein 13