PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr021741.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | NAC | ||||||||
Protein Properties | Length: 253aa MW: 28802.1 Da PI: 5.2527 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 145.2 | 3.6e-45 | 4 | 135 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppG+rF Pt+eel+++yL++k+egk++++ + i+ +d+y+ ePwdLpk +++++++w+fF++r++++a+g r+nr+t+sgyWkatg+ v+s Pbr021741.1 4 LPPGYRFYPTEEELISFYLHNKLEGKQVDTRRLIPVMDVYSKEPWDLPKfsgeLCNGDREQWFFFTPRQQREAQGGRPNRTTASGYWKATGSPGYVYS 101 79****************************999***************656754445677************************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++++g+kkt+vfyk +ap+g+kt+W m+ yr+ Pbr021741.1 102 SDNKVIGVKKTMVFYKDKAPTGRKTKWKMNVYRA 135 ******************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-48 | 3 | 164 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 47.612 | 4 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.5E-23 | 5 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MEELPPGYRF YPTEEELISF YLHNKLEGKQ VDTRRLIPVM DVYSKEPWDL PKFSGELCNG 60 DREQWFFFTP RQQREAQGGR PNRTTASGYW KATGSPGYVY SSDNKVIGVK KTMVFYKDKA 120 PTGRKTKWKM NVYRAIEVDN LTSTSASTST PKLRDEFSLC RVYVVSGSAR AFDRRPLEPV 180 EAQQKFSNST EASTSSLKTT MVDKASSSDE TYSHSGELGD LLETSAGINS SNWEINEGFE 240 EPLWEWEQLN FL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-36 | 4 | 170 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-36 | 4 | 170 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-36 | 4 | 170 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-36 | 4 | 170 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-36 | 4 | 170 | 20 | 173 | NAC domain-containing protein 19 |
3swm_B | 4e-36 | 4 | 170 | 20 | 173 | NAC domain-containing protein 19 |
3swm_C | 4e-36 | 4 | 170 | 20 | 173 | NAC domain-containing protein 19 |
3swm_D | 4e-36 | 4 | 170 | 20 | 173 | NAC domain-containing protein 19 |
3swp_A | 4e-36 | 4 | 170 | 20 | 173 | NAC domain-containing protein 19 |
3swp_B | 4e-36 | 4 | 170 | 20 | 173 | NAC domain-containing protein 19 |
3swp_C | 4e-36 | 4 | 170 | 20 | 173 | NAC domain-containing protein 19 |
3swp_D | 4e-36 | 4 | 170 | 20 | 173 | NAC domain-containing protein 19 |
4dul_A | 3e-36 | 4 | 170 | 17 | 170 | NAC domain-containing protein 19 |
4dul_B | 3e-36 | 4 | 170 | 17 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr021741.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009377822.1 | 0.0 | PREDICTED: NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 5e-89 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A498KBV7 | 1e-177 | A0A498KBV7_MALDO; Uncharacterized protein | ||||
STRING | XP_009377821.1 | 1e-178 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF871 | 34 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 2e-91 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
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