PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr021741.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NAC
Protein Properties Length: 253aa    MW: 28802.1 Da    PI: 5.2527
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr021741.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM145.23.6e-4541351128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                  lppG+rF Pt+eel+++yL++k+egk++++ + i+ +d+y+ ePwdLpk     +++++++w+fF++r++++a+g r+nr+t+sgyWkatg+   v+s
  Pbr021741.1   4 LPPGYRFYPTEEELISFYLHNKLEGKQVDTRRLIPVMDVYSKEPWDLPKfsgeLCNGDREQWFFFTPRQQREAQGGRPNRTTASGYWKATGSPGYVYS 101
                  79****************************999***************656754445677************************************** PP

          NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                  ++++++g+kkt+vfyk +ap+g+kt+W m+ yr+
  Pbr021741.1 102 SDNKVIGVKKTMVFYKDKAPTGRKTKWKMNVYRA 135
                  ******************************9985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-483164IPR003441NAC domain
PROSITE profilePS5100547.6124165IPR003441NAC domain
PfamPF023652.5E-235134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MEELPPGYRF YPTEEELISF YLHNKLEGKQ VDTRRLIPVM DVYSKEPWDL PKFSGELCNG  60
DREQWFFFTP RQQREAQGGR PNRTTASGYW KATGSPGYVY SSDNKVIGVK KTMVFYKDKA  120
PTGRKTKWKM NVYRAIEVDN LTSTSASTST PKLRDEFSLC RVYVVSGSAR AFDRRPLEPV  180
EAQQKFSNST EASTSSLKTT MVDKASSSDE TYSHSGELGD LLETSAGINS SNWEINEGFE  240
EPLWEWEQLN FL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-36417017170NO APICAL MERISTEM PROTEIN
1ut4_B3e-36417017170NO APICAL MERISTEM PROTEIN
1ut7_A3e-36417017170NO APICAL MERISTEM PROTEIN
1ut7_B3e-36417017170NO APICAL MERISTEM PROTEIN
3swm_A4e-36417020173NAC domain-containing protein 19
3swm_B4e-36417020173NAC domain-containing protein 19
3swm_C4e-36417020173NAC domain-containing protein 19
3swm_D4e-36417020173NAC domain-containing protein 19
3swp_A4e-36417020173NAC domain-containing protein 19
3swp_B4e-36417020173NAC domain-containing protein 19
3swp_C4e-36417020173NAC domain-containing protein 19
3swp_D4e-36417020173NAC domain-containing protein 19
4dul_A3e-36417017170NAC domain-containing protein 19
4dul_B3e-36417017170NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr021741.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009377822.10.0PREDICTED: NAC domain-containing protein 90
SwissprotQ9FMR35e-89NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A498KBV71e-177A0A498KBV7_MALDO; Uncharacterized protein
STRINGXP_009377821.11e-178(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87134123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.12e-91NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]