PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr021555.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

WRKY

Protein Properties

Length: 312aa MW: 34183.4 Da PI: 5.9151

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr021555.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.5	1.8e-30	92	150	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs++pr+YYrC+++ gC ++k+vers++dp+++++tY+g+H+h Pbr021555.1 92 ADLWAWRKYGQKPIKGSPHPRNYYRCSTSkGCAARKHVERSTTDPNIFTVTYSGDHTHA 150 699*********************9988**************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.4E-30	77	152	IPR003657	WRKY domain
PROSITE profile	PS50811	32.719	86	152	IPR003657	WRKY domain
SuperFamily	SSF118290	1.03E-25	88	152	IPR003657	WRKY domain
SMART	SM00774	2.9E-35	91	151	IPR003657	WRKY domain
Pfam	PF03106	9.7E-26	93	149	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MPDHFTRGIP APAFRGIYGQ QQPQMMQRGY QILQSQQPQN QQGFMRPGSM NPTYPLPRLP 60 ITMPLHTPRS QRRRRTQQNK KVCEVKAEDL TADLWAWRKY GQKPIKGSPH PRNYYRCSTS 120 KGCAARKHVE RSTTDPNIFT VTYSGDHTHA RPTHRNSLAG TSRNKKSAAS KNQKQPINND 180 SGWAAVPNPS SPTTGQPLTV QAEALANKVN SDNSLDKENE EFDDDDEEMD ETEYGDEDED 240 DDVVIPDMDM SDEIFMGQKE LGSTSSSGSG SSSLVGASGD NFSDNVQSSL GYSWTDANCS 300 SAAGATVGGG C*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	4e-19	80	153	6	80	Disease resistance protein RRS1
5w3x_D	4e-19	80	153	6	80	Disease resistance protein RRS1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr021555.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009377624.1	0.0	PREDICTED: probable WRKY transcription factor 27
Refseq	XP_009377627.1	0.0	PREDICTED: probable WRKY transcription factor 27
TrEMBL	A0A498KLJ6	1e-156	A0A498KLJ6_MALDO; Uncharacterized protein
STRING	XP_009377624.1	0.0	(Pyrus x bretschneideri)
STRING	XP_009377627.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF18883	2	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52830.1	8e-45	WRKY DNA-binding protein 27