PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pbr021092.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 249aa MW: 27135.4 Da PI: 6.7806 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 130.9 | 5.4e-41 | 8 | 106 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk++rrkC+++Cv+apyfp +qp+kfanvh ++Gasnv k+l++l+ reda++sl+yeAear+rdPvyG+vg+i+ lq++l+q++++l +k Pbr021092.1 8 PCAACKFQRRKCTQECVFAPYFPPDQPQKFANVHTVYGASNVGKILNELNVAYREDAVTSLAYEAEARLRDPVYGCVGFISFLQNRLRQVQTDLYNAK 105 7********************************************************************************************98887 PP DUF260 99 e 99 + Pbr021092.1 106 K 106 6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.963 | 7 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.5E-40 | 8 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 249 aa Download sequence Send to blast |
MSSNTHSPCA ACKFQRRKCT QECVFAPYFP PDQPQKFANV HTVYGASNVG KILNELNVAY 60 REDAVTSLAY EAEARLRDPV YGCVGFISFL QNRLRQVQTD LYNAKKDLSA YIGPQALMIP 120 LLGATTGPPP QQGCREGQLL IRDQHQQQLF EAHQQELVRF NINGMDAAAS LVNGNGFNQI 180 PAAAASKGVV SGSLGLGGAF DNNHYNQIEQ QAAAHHLNSL DHQLQAQLMF QPHPAALESQ 240 QKSVGEES* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-44 | 7 | 111 | 10 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-44 | 7 | 111 | 10 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pbr021092.1 |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009377477.1 | 0.0 | PREDICTED: LOB domain-containing protein 36-like | ||||
Swissprot | Q9FKZ3 | 9e-62 | LBD36_ARATH; LOB domain-containing protein 36 | ||||
TrEMBL | A0A498IUH3 | 1e-171 | A0A498IUH3_MALDO; Uncharacterized protein | ||||
STRING | XP_009377477.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2353 | 34 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G66870.1 | 9e-61 | ASYMMETRIC LEAVES 2-like 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|