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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr020777.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | MYB | ||||||||
Protein Properties | Length: 237aa MW: 27479.6 Da PI: 5.1841 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.2 | 3.7e-13 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W +eEdell v++ G+++W++ a++ g++R++ +c+ rw++yl Pbr020777.1 15 KGLWLEEEDELLTTFVNLKGNRRWDALAKESGLRRSGRSCRMRWLNYL 62 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 45.3 | 2e-14 | 75 | 113 | 8 | 48 |
HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 E++ ++++++++G++ W++Iar ++ gRt++++k++w+++l Pbr020777.1 75 EEKTILQLHQRWGNK-WSKIARALP-GRTDNEIKNYWRTHL 113 99*************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.577 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.97E-25 | 13 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-11 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.8E-12 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.5E-17 | 16 | 69 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.914 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 8.6E-12 | 67 | 115 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-22 | 70 | 116 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.2E-13 | 75 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.56E-9 | 75 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MMACQAAMDG EKLRKGLWLE EEDELLTTFV NLKGNRRWDA LAKESGLRRS GRSCRMRWLN 60 YLHPNVKHGQ ITIIEEKTIL QLHQRWGNKW SKIARALPGR TDNEIKNYWR THLKKKTQIP 120 DGNFQCTLNK NGRGLFCQEG DMNNEKYDFD QDHDSVKNSW ETKVTSSDDL CLSDFAVTNS 180 PYETQLSDWI SELSSEQNGT AYNQDCNSVE SDLCHLTWTP DDSDTWDCPS FLWDMN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 7e-23 | 13 | 117 | 2 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 2e-22 | 5 | 117 | 49 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-22 | 5 | 117 | 49 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 8e-23 | 13 | 117 | 2 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 8e-23 | 13 | 117 | 2 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr020777.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009377046.1 | 1e-172 | PREDICTED: transcription factor MYB59-like | ||||
TrEMBL | A0A498IHT6 | 1e-162 | A0A498IHT6_MALDO; Uncharacterized protein | ||||
STRING | XP_009377046.1 | 1e-171 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13169 | 26 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53200.1 | 6e-48 | myb domain protein 27 |