PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr020365.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | MYB | ||||||||
Protein Properties | Length: 200aa MW: 22472.5 Da PI: 9.8225 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.4 | 4.3e-15 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ede+l ++v++ G g W++ + g+ R++k+c++rw +yl Pbr020365.1 13 KGAWSKQEDEKLTQYVEKNGEGIWRSLPLAAGLLRCGKSCRLRWVNYL 60 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 53.4 | 6e-17 | 66 | 111 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l Pbr020365.1 66 RGNFGEDEEDLIIRLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 111 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.6E-20 | 4 | 62 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.614 | 8 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.14E-27 | 11 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-11 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.5E-13 | 13 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.15E-8 | 15 | 60 | No hit | No description |
PROSITE profile | PS51294 | 25.94 | 61 | 115 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-26 | 63 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-16 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.2E-16 | 66 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.42E-12 | 68 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MRKPCCEKRK TKKGAWSKQE DEKLTQYVEK NGEGIWRSLP LAAGLLRCGK SCRLRWVNYL 60 RPNVKRGNFG EDEEDLIIRL HALLGNRWSL IAGRLPGRTD NEVKNYWNTH LRRKLIQMGV 120 DPNNHRIGHT HNIGLTKPSF GSRKVNYLSE PVDSQGDKDS DQIKPLSDST SGLESNTSCS 180 GLPDLNLDIT IGPPSSFGY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-26 | 13 | 115 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr020365.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB434547 | 1e-35 | AB434547.1 Fagus crenata FcMYBS2 mRNA for transcription factor MYBS2, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009347822.1 | 1e-146 | PREDICTED: myb-related protein 308-like | ||||
Swissprot | P81393 | 4e-71 | MYB08_ANTMA; Myb-related protein 308 | ||||
TrEMBL | A0A498JL09 | 1e-132 | A0A498JL09_MALDO; Uncharacterized protein | ||||
STRING | XP_009347822.1 | 1e-145 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF264 | 34 | 221 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 3e-72 | myb domain protein 4 |
Publications ? help Back to Top | |||
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