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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr019903.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | MYB | ||||||||
Protein Properties | Length: 279aa MW: 32009.4 Da PI: 9.7408 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.6 | 8.9e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed++l ++k +G g W++I+++ g++R++k+c++rw++yl Pbr019903.1 14 KGAWTALEDQILTGYIKTHGEGKWRRIPKEAGLRRCGKSCRLRWLNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 56.7 | 5.5e-18 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T+eE++l+++++k+lG++ W++Ia +++ gRt++++k++w++yl Pbr019903.1 67 RGNITQEEEDLIIRLHKLLGNR-WSLIAGRIP-GRTDNEIKNYWNTYL 112 7999******************.*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.1E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.965 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.56E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.64E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 27.339 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-16 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.81E-12 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MGRSPCCSKE GLKKGAWTAL EDQILTGYIK THGEGKWRRI PKEAGLRRCG KSCRLRWLNY 60 LRPDIKRGNI TQEEEDLIIR LHKLLGNRWS LIAGRIPGRT DNEIKNYWNT YLRKKVNGAE 120 TPRLLGNKVD ENNKKKKKKR RDNSEKTNPS VNKTKPRAMV KSDSFAVIRT KASRCNKVLV 180 MPDQLPDHQI NHGLLEDTTT TISEDSMLDF DVGELLVSEN NDIPDDSDFW KICQQLEDNT 240 NNGGSKNRCP SSTSLAPLLF SEEMLKDWMR DDFFNRQC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-26 | 12 | 117 | 5 | 109 | B-MYB |
1h8a_C | 4e-26 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 134 | 140 | KKKKKRR |
2 | 135 | 140 | KKKKRR |
3 | 136 | 140 | KKKRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr019903.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB897865 | 1e-108 | AB897865.1 Prunus persica Peace mRNA for R2R3 Myb transcription factor, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009362675.1 | 0.0 | PREDICTED: transcription repressor MYB5-like | ||||
TrEMBL | A0A498HTW2 | 0.0 | A0A498HTW2_MALDO; Uncharacterized protein | ||||
STRING | XP_009362675.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 7e-62 | myb domain protein 3 |