PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr019853.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 538aa    MW: 59151.5 Da    PI: 8.5009
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr019853.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.17.5e-0688110123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++C+k F r  nL+ H r H
  Pbr019853.1  88 FVCEICNKGFQREQNLQLHRRGH 110
                  89*******************88 PP
2zf-C2H212.40.00046164186123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC++C+k++  +s+ k H +++
  Pbr019853.1 164 WKCEKCSKRYAVQSDWKAHSKVC 186
                  58*****************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.1E-587110IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.33E-787110No hitNo description
PROSITE profilePS5015711.07488110IPR007087Zinc finger, C2H2
PfamPF121712.9E-588110IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.003488110IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028090110IPR007087Zinc finger, C2H2
SMARTSM00355160129159IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.0E-4152184IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.33E-7159184No hitNo description
SMARTSM00355130164184IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MMNKGLMLDE NMSNLTCASG DLSASNSSIR NESSSAGTVY PHPPSAAQIQ QQQAPPPPKK  60
KRNLPGNPDP DAEVIALSPK SLMATNRFVC EICNKGFQRE QNLQLHRRGH NLPWKLKQRT  120
GKEVRKKVYL CPEPTCVHHD PSRALGDLTG IKKHFSRKHG EKKWKCEKCS KRYAVQSDWK  180
AHSKVCGTRE YRCDCGTLFS RRDSFITHRA FCDALAQENN TSSAAARSVM PASINPLLSS  240
LPQLHSHGLQ AQSAVKREQD QHQQQLLPPW LSFLPEGGEA ASLPTMNLSA SPLFSTSSFQ  300
QYYSFGQNPN PSSSSTALLP DNFQLQQNTA SPHMSATALL QKASEMGATI SKSSPSPYLL  360
KPPTHQSHQA HQAHISNETS RDQAILLDDG FGNNESKSSL FHDMMMMSSS HGFGHDHHQV  420
SSSSFGDHHH QQQQQAFNGI MVDGNFVEIN NNNPPNNYNK PRGTDNNNNN NEGLTRDFLG  480
LRAPFSSAAA SHGGHGDLFS INMVGLDHHH HVSTSSSSPA AYNNGQQNDQ NQTSWQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-32160224367Zinc finger protein JACKDAW
5b3h_F1e-32160224367Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114126KLKQRTGKEVRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr019853.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009361972.10.0PREDICTED: protein indeterminate-domain 7-like
TrEMBLA0A498HND70.0A0A498HND7_MALDO; Uncharacterized protein
STRINGXP_009361972.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-111indeterminate(ID)-domain 7