PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Cis-element |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Pbr019808.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

MYB_related

Protein Properties

Length: 248aa MW: 27365.2 Da PI: 4.8097

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr019808.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.2	2.4e-15	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd l+ + + +G+g +W + +++ g++R++k+c++rw++yl Pbr019808.1 14 RGPWSPEEDAALKSYLESHGTGgNWILLPKKAGLRRCGKSCRLRWLNYL 62 89*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.5E-22	5	65	IPR009057	Homeodomain-like
PROSITE profile	PS51294	21.121	9	66	IPR017930	Myb domain
SMART	SM00717	2.4E-11	13	64	IPR001005	SANT/Myb domain
Pfam	PF00249	3.1E-14	14	62	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.66E-19	15	90	IPR009057	Homeodomain-like
CDD	cd00167	5.74E-9	16	62	No hit	No description
PROSITE profile	PS50090	4.286	63	99	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	1.5E-7	66	90	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MGRAPCCDKD NVKRGPWSPE EDAALKSYLE SHGTGGNWIL LPKKAGLRRC GKSCRLRWLN 60 YLRPDIKHGS FTEEEDSIIF SLYNQMGSRQ VKNISSEERE PTITNNANFS GIPKTEEPQD 120 PAFSTFQTAT LQTLSDVNFG LNAYNQTLSL NPDQLYSPKP LGFSNFGASS RRNFSTTVSL 180 SQEGSSVSDS SSIAGNGYLD QDSWFCMDYG YGMAYDNNVN YYGMCFEKKT SEAVPSGCTD 240 LGELFSS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	4e-14	14	89	7	80	B-MYB
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr019808.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009361466.1	1e-170	PREDICTED: transcription factor MYB36-like
TrEMBL	A0A498HTW4	1e-166	A0A498HTW4_MALDO; Uncharacterized protein
STRING	XP_009361466.1	1e-169	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF130	34	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36890.1	1e-51	MYB family protein