PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr019804.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family HD-ZIP
Protein Properties Length: 304aa    MW: 34237.1 Da    PI: 7.0803
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr019804.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.45.9e-19144198256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  rk+ ++tkeq  +Le+ F+++ +++ ++++eLA+kl+L  rqV vWFqNrRa+ k
  Pbr019804.1 144 RKKLRLTKEQSSTLEDNFREHTTLNPKQKQELARKLNLRPRQVEVWFQNRRARTK 198
                  78889************************************************98 PP
2HD-ZIP_I/II120.31e-38144232190
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                  +kk+rl+keq+++LE++F+e+++L+p++K+elar+L+l+prqv+vWFqnrRARtk+kq+E d+e Lk+++++lkeen+rL+ke +eL+ +
  Pbr019804.1 144 RKKLRLTKEQSSTLEDNFREHTTLNPKQKQELARKLNLRPRQVEVWFQNRRARTKLKQTEADFELLKQCCETLKEENRRLHKELQELK-S 232
                  69*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-17129198IPR009057Homeodomain-like
SuperFamilySSF466891.38E-18133201IPR009057Homeodomain-like
PROSITE profilePS5007117.767140200IPR001356Homeobox domain
SMARTSM003893.3E-16142204IPR001356Homeobox domain
CDDcd000862.60E-16143201No hitNo description
PfamPF000461.9E-16144198IPR001356Homeobox domain
PROSITE patternPS000270175198IPR017970Homeobox, conserved site
PfamPF021832.9E-9200235IPR003106Leucine zipper, homeobox-associated
SMARTSM003409.8E-17200243IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MGFDHEACNT GLGLSLGCQA NPDHHTNLQA FDLDHQKKKK IQLKYDHLLP ALTLGPSSGD  60
SKIEAAESDD HLHQVVHVQA KEQVSSPCSG AVSSFSNSSS FKRDRDIGVE EIEGEEERVV  120
NITTSSRVSD ELYDQDQDHE GSPRKKLRLT KEQSSTLEDN FREHTTLNPK QKQELARKLN  180
LRPRQVEVWF QNRRARTKLK QTEADFELLK QCCETLKEEN RRLHKELQEL KSMKQTATAA  240
APFYMQFPTA TLTMCPSCEK ICNGGDHRNH NHNNGSSTSP FLIGSNKTHL IFNPYSTHPS  300
TAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1192200RRARTKLKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr019804.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009361424.10.0PREDICTED: homeobox-leucine zipper protein HAT22-like
TrEMBLA0A498HVJ80.0A0A498HVJ8_MALDO; Uncharacterized protein
STRINGXP_009361424.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114433107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.16e-66HD-ZIP family protein