PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr019789.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 426aa    MW: 45790.9 Da    PI: 6.2922
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr019789.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.14.2e-10272320355
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  Pbr019789.1 272 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 320
                  58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.43E-11267324No hitNo description
SuperFamilySSF474596.67E-17267336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485269319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-16270337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-7272320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10275325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MGGHDSEDVG FQHRNDGSLN CPSSGMKTNP LPEKVSRMAM SSVSMFKPSN GADPFFGSGW  60
DPIVSLSQSD NFGSSTGVSH GEFPNPPYPF AMENQGMSST SHLVQYPSDS SYAGMVPKLP  120
PCFGSGSFTE MVGSFGVSEC GQIANPGCPP NYNPNREGGT LTIGAQSHDD HQISEESALG  180
SSPNGKRRKR VPESNSAFSP NKNVDGELNK DMSGESSDYL KEQDEKKAKT GENAAANLRG  240
KQMGRQAKEN SQSGDPKDSY IHVRARRGQA TNSHSLAERV RREKISERMR LLQELVPGCN  300
KITGKAVMLD EIINYVQSLQ QQVEFLSMKL ATVNPELNID IERILSKDIL NSRSGGGAIF  360
GFSPGIGSPH PYPPGMFHGN LPSLLTSAPQ FPSLPQNVLD NELQGLFHMG FDSSSAIDNM  420
GQNGK*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr019789.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009361221.10.0PREDICTED: transcription factor bHLH74 isoform X2
TrEMBLA0A498HQ870.0A0A498HQ87_MALDO; Uncharacterized protein
STRINGXP_009361213.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75853345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.12e-89bHLH family protein