PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr019675.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WRKY
Protein Properties Length: 343aa    MW: 37399.6 Da    PI: 9.7356
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr019675.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.91.5e-31270327359
                  -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  D y+WrKYGqK++kgs++pr+YY+C+s+ gC ++k+ver+ +dp+++++tYeg+Hnh+
  Pbr019675.1 270 DDYSWRKYGQKPIKGSPYPRGYYKCSSErGCLARKHVERAVDDPTMLIVTYEGDHNHS 327
                  99*************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.4E-15220266IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.1E-32257327IPR003657WRKY domain
PROSITE profilePS5081131.031263329IPR003657WRKY domain
SuperFamilySSF1182901.83E-26265327IPR003657WRKY domain
SMARTSM007742.7E-37268328IPR003657WRKY domain
PfamPF031061.5E-26270326IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MALELMMGLI DSFAAKREEN AVKEAASAGI QSVEKFISLI SQHHHQSVSS NTEDETEYKE  60
VADMAVTKFR KVISLLDKGR IGHARFRKAP VSQIPTPSIS EPHDQETEQP SVFRTEQSSA  120
FKVYCPTPVV RLPPLPQNPH LKTTPVALKK GIGCAERKMD SAAAATISFS PSAPKTVANS  180
FISSLTAGDA AEQSISSGFQ FTNMSQSSSG RPPLSSSSLK RKCSSVDNVS RLRCGSTTGR  240
CHCSKTRKLK VKRVIRVPAI SMKLADIPPD DYSWRKYGQK PIKGSPYPRG YYKCSSERGC  300
LARKHVERAV DDPTMLIVTY EGDHNHSLSV TDPTATLILE SS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-222663281576Probable WRKY transcription factor 4
2lex_A7e-222663281576Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr019675.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009359958.10.0PREDICTED: probable WRKY transcription factor 7
SwissprotQ9STX01e-99WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A498HV750.0A0A498HV75_MALDO; Uncharacterized protein
STRINGXP_009359958.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21773486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.19e-91WRKY DNA-binding protein 7