PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr019663.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

NAC

Protein Properties

Length: 282aa MW: 31474.5 Da PI: 7.2599

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr019663.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	80.1	4.8e-25	12	141	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 l+pG+ F P+de+l+++yL k +++ + i+e+d+y+++P +Lp+ ++ ++ ++ ++F+ + + k+r +ksgyW+ +g+ ++v Pbr019663.1 12 LAPGCGFYPSDEQLLCYYLSSKNASEAgkSGGYDLIRELDLYEHDPFELPEsacySYGHGGRKRHWFCYTVRVL-----KERRAKSGYWRRKGRVRDV 104 579*****************9888854444678**********9546653333555566666665543.....3455699******** PP NAM 93 lsk.kgelvglkktLvfykgrap.kgektdWvmheyr 127 l + ++ + g + ++vfy g++p ++++tdWv+ +y+ Pbr019663.1 105 LGRgGKVVLGRRSSFVFYLGNSPnDAVRTDWVLYQYA 141 95555689******886551678*******6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.75E-30	8	158	IPR003441	NAC domain
PROSITE profile	PS51005	33.766	12	158	IPR003441	NAC domain
Pfam	PF02365	5.3E-14	14	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MGDPKATSLL SLAPGCGFYP SDEQLLCYYL SSKNASEAGK SGGYDLIREL DLYEHDPFEL 60 PESACYSYGH GGRKRHWFCY TVRVLKERRA KSGYWRRKGR VRDVLGRGGK VVLGRRSSFV 120 FYLGNSPNDA VRTDWVLYQY AQVDHVKAAF VLCRIFVRSG SGNRISDHGL SSCAEESACT 180 VRHIGIQHDG FHAPTISENE KHGDTSVPRK NEMSKYPLRL DRELDDRVMT GPVSISRIQP 240 NEQVPESVLG GSNPILLDNL AAKHVLCIME GDFIELDDLI D*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-20	10	164	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-20	10	164	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-20	10	164	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-20	10	164	15	171	NO APICAL MERISTEM PROTEIN
3swm_A	4e-20	10	164	18	174	NAC domain-containing protein 19
3swm_B	4e-20	10	164	18	174	NAC domain-containing protein 19
3swm_C	4e-20	10	164	18	174	NAC domain-containing protein 19
3swm_D	4e-20	10	164	18	174	NAC domain-containing protein 19
3swp_A	4e-20	10	164	18	174	NAC domain-containing protein 19
3swp_B	4e-20	10	164	18	174	NAC domain-containing protein 19
3swp_C	4e-20	10	164	18	174	NAC domain-containing protein 19
3swp_D	4e-20	10	164	18	174	NAC domain-containing protein 19
4dul_A	4e-20	10	164	15	171	NAC domain-containing protein 19
4dul_B	4e-20	10	164	15	171	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr019663.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF198118	0.0	KF198118.1 Malus hupehensis NAC domain protein (NAC41) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009359865.1	0.0	PREDICTED: NAC domain-containing protein 72-like
TrEMBL	A0A498JE73	0.0	A0A498JE73_MALDO; Uncharacterized protein
STRING	XP_009359865.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13001	26	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27410.2	3e-19	NAC family protein