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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr019570.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | NAC | ||||||||
Protein Properties | Length: 356aa MW: 41385.8 Da PI: 6.9049 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 175.3 | 1.8e-54 | 7 | 136 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +ppGfrFhPtdeelv++yL+kk+++k++++ +v+++vd+yk+ePwdL+ k+ + +++ewyfF ++dkky+tg+r+nratk+g+Wkatg+dk++++ Pbr019570.1 7 VPPGFRFHPTDEELVDYYLRKKTASKPIDF-DVVRDVDLYKIEPWDLEDlcKIGSgDQNEWYFFNHKDKKYPTGHRSNRATKAGFWKATGRDKAIYR- 102 69****************************.99**************943466553556**************************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 ++ lvg++ktLvfykgrap+g+k+dW+mheyrle Pbr019570.1 103 GKLLVGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136 999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.18E-56 | 5 | 140 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.823 | 7 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.6E-28 | 8 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MDTLSHVPPG FRFHPTDEEL VDYYLRKKTA SKPIDFDVVR DVDLYKIEPW DLEDLCKIGS 60 GDQNEWYFFN HKDKKYPTGH RSNRATKAGF WKATGRDKAI YRGKLLVGMR KTLVFYKGRA 120 PNGQKSDWIM HEYRLETSEN GTPQAMRRTG DYESPNCYDQ VPFMQQLDNS PRTSISHTYV 180 SSQYQQQLHY SQCKPELDLQ YNMPHHHHDS FLQLPQLESP KVPHQPATPY GNYVMQSSTL 240 TQEEQLHYFR PQNPFNSSVS SSGHMHYNNT DYLQVVDQVK DWRALDKYVA SQLSHDQQGA 300 SKEVTNYSNA QETFHVAEHI NMLANEASRR PDYNNNGQEY YASTSTSSCQ IDLWK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-44 | 6 | 135 | 14 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr019570.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009376510.1 | 0.0 | PREDICTED: NAC domain-containing protein 7-like | ||||
Swissprot | Q9FWX2 | 1e-119 | NAC7_ARATH; NAC domain-containing protein 7 | ||||
TrEMBL | A0A498JU37 | 0.0 | A0A498JU37_MALDO; Uncharacterized protein | ||||
STRING | XP_009376510.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1269 | 33 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12260.1 | 1e-119 | NAC 007 |
Publications ? help Back to Top | |||
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