PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr019570.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NAC
Protein Properties Length: 356aa    MW: 41385.8 Da    PI: 6.9049
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr019570.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.31.8e-5471361129
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                  +ppGfrFhPtdeelv++yL+kk+++k++++ +v+++vd+yk+ePwdL+   k+ + +++ewyfF ++dkky+tg+r+nratk+g+Wkatg+dk++++ 
  Pbr019570.1   7 VPPGFRFHPTDEELVDYYLRKKTASKPIDF-DVVRDVDLYKIEPWDLEDlcKIGSgDQNEWYFFNHKDKKYPTGHRSNRATKAGFWKATGRDKAIYR- 102
                  69****************************.99**************943466553556**************************************. PP

          NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrle 129
                  ++ lvg++ktLvfykgrap+g+k+dW+mheyrle
  Pbr019570.1 103 GKLLVGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136
                  999*****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-565140IPR003441NAC domain
PROSITE profilePS5100553.8237160IPR003441NAC domain
PfamPF023656.6E-288135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MDTLSHVPPG FRFHPTDEEL VDYYLRKKTA SKPIDFDVVR DVDLYKIEPW DLEDLCKIGS  60
GDQNEWYFFN HKDKKYPTGH RSNRATKAGF WKATGRDKAI YRGKLLVGMR KTLVFYKGRA  120
PNGQKSDWIM HEYRLETSEN GTPQAMRRTG DYESPNCYDQ VPFMQQLDNS PRTSISHTYV  180
SSQYQQQLHY SQCKPELDLQ YNMPHHHHDS FLQLPQLESP KVPHQPATPY GNYVMQSSTL  240
TQEEQLHYFR PQNPFNSSVS SSGHMHYNNT DYLQVVDQVK DWRALDKYVA SQLSHDQQGA  300
SKEVTNYSNA QETFHVAEHI NMLANEASRR PDYNNNGQEY YASTSTSSCQ IDLWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-44613514140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr019570.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009376510.10.0PREDICTED: NAC domain-containing protein 7-like
SwissprotQ9FWX21e-119NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A498JU370.0A0A498JU37_MALDO; Uncharacterized protein
STRINGXP_009376510.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126933106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-119NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]