PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr019487.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | NAC | ||||||||
Protein Properties | Length: 388aa MW: 42960.7 Da PI: 4.6472 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 153.1 | 1.3e-47 | 8 | 136 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 l pGfrF+Ptd elv++yLk+kv gk+l+ ++++evdi+k+ PwdLp k + ++++ +wyfF+++++ky+tg r++r+t+ gyWkatg+d++vl + Pbr019487.1 8 LSPGFRFSPTDVELVQYYLKRKVMGKRLPY-NFVAEVDIHKYAPWDLPeKsTWQSGDLKWYFFCPTERKYPTGARAKRTTECGYWKATGNDRSVLY-N 103 579***************************.89**************95345666778**************************************.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrle 129 ge+ g ktL+f++grapkge+tdWvmheyrle Pbr019487.1 104 GEVAGKIKTLIFHTGRAPKGERTDWVMHEYRLE 136 99*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.75E-57 | 5 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.859 | 8 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.6E-24 | 10 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
MGKGKSSLSP GFRFSPTDVE LVQYYLKRKV MGKRLPYNFV AEVDIHKYAP WDLPEKSTWQ 60 SGDLKWYFFC PTERKYPTGA RAKRTTECGY WKATGNDRSV LYNGEVAGKI KTLIFHTGRA 120 PKGERTDWVM HEYRLESKDL ANRGVPQESY VLCTIFQKEG PGPKNGAQYG APLMEEDWSD 180 DEAENCSEAV PHANMREPNL VLPSNYNGSI TTSTYSHESI HIRPSSESCI SDAVPLSCHV 240 PQLVSSNHAT VEEPHTSNDD DILSILACFS EESPSLIKEN EKNEELGNVV PIGNDSAAPH 300 VVSDDVYVAL GDLGKVARVG EDGCSFSSLP NSVCATGQMP LGDDGQYLEL DDLGEQFNYH 360 DSTHTRPPMF GEPQTLMGEM PFQDETS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-45 | 7 | 159 | 14 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00583 | DAP | Transfer from AT5G64060 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr019487.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009376546.1 | 0.0 | PREDICTED: NAC domain-containing protein 82-like | ||||
Refseq | XP_009376547.1 | 0.0 | PREDICTED: NAC domain-containing protein 82-like | ||||
Refseq | XP_009376548.1 | 0.0 | PREDICTED: NAC domain-containing protein 82-like | ||||
Refseq | XP_009376549.1 | 0.0 | PREDICTED: NAC domain-containing protein 82-like | ||||
TrEMBL | A0A498IQ87 | 0.0 | A0A498IQ87_MALDO; Uncharacterized protein | ||||
STRING | XP_009376546.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3302 | 34 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64060.1 | 7e-95 | NAC domain containing protein 103 |