|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Pbr019289.1 |
Common Name | LOC103964998 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
|
Family |
NAC |
Protein Properties |
Length: 351aa MW: 39700.6 Da PI: 6.1775 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pbr019289.1 | genome | CPETR | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 182.2 | 1.2e-56 | 16 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98
lppGfrFhPtdeel+++yL++kv ++ + + ++i evd++k+ePwdLp+++k +e+ewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ ++
Pbr019289.1 16 LPPGFRFHPTDEELISHYLCPKVLDNFFCA-KAIGEVDLNKCEPWDLPRRAKMGEREWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYK-AKT 111
79************************9888.89***************99999*****************************************.999 PP
NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128
lvg+kktLvfykgrapkgekt+Wvmheyrl
Pbr019289.1 112 LVGMKKTLVFYKGRAPKGEKTNWVMHEYRL 141
****************************98 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 351 aa
Download sequence Send
to blast |
MENTSGFINV DEQMELPPGF RFHPTDEELI SHYLCPKVLD NFFCAKAIGE VDLNKCEPWD 60 LPRRAKMGER EWYFFCVRDR KYPTGLRTNR ATEAGYWKAT GKDKEIYKAK TLVGMKKTLV 120 FYKGRAPKGE KTNWVMHEYR LDGKNSACNL PQTAKNEWVI CRIFQKSSGG KKIHISGLVR 180 LSPFGNELRS SLLPPLMDSP PYNSDARTTP TAGETSYVSC FSDPPEDQKT QDDIMDSFNN 240 GNNHHNNDIP YACSSPSNPS SDLNSIYSNQ ITPNIGLLQH QNSVLMQDES FMRMLTENQA 300 PNLRRSAKIE FPQDAGLSID ASSVVSNREM AQDDPSYSSA PVEFDCLWNY *
|
3D Structure ? help Back to Top |
|
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 8e-57 | 13 | 172 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-57 | 13 | 172 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-57 | 13 | 172 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-57 | 13 | 172 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 8e-57 | 13 | 172 | 14 | 171 | NAC domain-containing protein 19 |
4dul_B | 8e-57 | 13 | 172 | 14 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- Description ? help
Back to Top |
Source |
Description |
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | JF803737 | 0.0 | JF803737.1 Pyrus betulifolia cultivar Bunge NAC domain protein DL-NACP mRNA, complete cds. |
GenBank | JF803738 | 0.0 | JF803738.1 Pyrus x bretschneideri cultivar Yali NAC domain protein YL-NACP mRNA, complete cds. |