PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr019258.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | NAC | ||||||||
Protein Properties | Length: 379aa MW: 42572.8 Da PI: 7.3013 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.1 | 6.1e-52 | 15 | 141 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 pGfrFhPtdeelv +yLk+k++++ l++ e ik+vdiyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+ +++ Pbr019258.1 15 LPGFRFHPTDEELVGFYLKRKIQQRLLPI-ELIKQVDIYKYDPWDLPKLASTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSeGTK 111 69***************************.89***************9888999***************************************95666 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +glkk+Lvfy+gra kg ktdW+mhe+rl Pbr019258.1 112 CIGLKKSLVFYRGRAAKGIKTDWMMHEFRL 141 7***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.84E-57 | 13 | 172 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.758 | 14 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-25 | 16 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0045770 | Biological Process | positive regulation of asymmetric cell division | ||||
GO:0048103 | Biological Process | somatic stem cell division | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MEEKNEMERV DDVILPGFRF HPTDEELVGF YLKRKIQQRL LPIELIKQVD IYKYDPWDLP 60 KLASTGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSEGT KCIGLKKSLV 120 FYRGRAAKGI KTDWMMHEFR LPSLSDSAPP KKFLDKSLPA NDSWAICRIF KKTNSMAQRA 180 LSHSWASQFP EPTASNLFTQ QFSSENMSCT TDMGSTMQFW NNNDLQQPSN TNFSAFDTLP 240 YKPINPTVSK PSMFDGELPN GFMFSPVEMS GPMNSALIGD LSNPAGSIDF DGSQQQFTGF 300 SISLQQQDQL QGNIGTSENE GGFRKNVSSS STSQWGTSSV RSIGFPFSLA SEDEAWKPTL 360 PSDSPPCPSS YSTNKCYT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-53 | 16 | 175 | 17 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00537 | DAP | Transfer from AT5G39820 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr019258.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009376262.1 | 0.0 | PREDICTED: protein FEZ-like | ||||
TrEMBL | A0A498J6X0 | 0.0 | A0A498J6X0_MALDO; Uncharacterized protein | ||||
STRING | XP_009376262.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2013 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39820.1 | 1e-106 | NAC domain containing protein 94 |