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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Pbr019244.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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| Family |
C3H |
| Protein Properties |
Length: 311aa MW: 32494.5 Da PI: 9.0671 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pbr019244.1 | genome | CPETR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 19.4 | 1.8e-06 | 51 | 74 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25
k ++C f+ t C++G++C+F H
Pbr019244.1 51 KSKPCTKFFSTAGCPFGESCHFLH 74
7789******************** PP
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| 2 | zf-CCCH | 22.7 | 1.8e-07 | 115 | 140 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
k ++C+ + Ck+Gd+C+FaHg+
Pbr019244.1 115 KSRICNKYNSAEGCKFGDKCHFAHGE 140
5689999999999***********96 PP
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| 3 | zf-CCCH | 34.8 | 2.8e-11 | 277 | 301 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
+kt+lC++f + GtC +G+rC+FaHg
Pbr019244.1 277 FKTKLCDNFTK-GTCTFGERCHFAHG 301
69*********.*************8 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50103 | 12.709 | 49 | 77 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.91 | 49 | 76 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 7.59E-6 | 50 | 75 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 7.5E-8 | 51 | 74 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.5E-4 | 51 | 74 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 6.5E-13 | 110 | 145 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.028 | 113 | 141 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 2.22E-7 | 114 | 144 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.016 | 115 | 140 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.6E-5 | 115 | 140 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF54791 | 8.04E-16 | 173 | 252 | IPR004088 | K Homology domain, type 1 |
| Gene3D | G3DSA:3.30.1370.10 | 1.2E-17 | 180 | 252 | IPR004088 | K Homology domain, type 1 |
| SMART | SM00322 | 1.0E-12 | 181 | 251 | IPR004087 | K Homology domain |
| PROSITE profile | PS50084 | 14.718 | 182 | 246 | IPR004088 | K Homology domain, type 1 |
| Pfam | PF00013 | 3.3E-12 | 184 | 248 | IPR004088 | K Homology domain, type 1 |
| CDD | cd00105 | 1.74E-15 | 184 | 246 | No hit | No description |
| Gene3D | G3DSA:4.10.1000.10 | 4.0E-16 | 272 | 307 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 16.117 | 276 | 303 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.7E-7 | 276 | 302 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.57E-8 | 276 | 306 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 7.1E-9 | 277 | 301 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 311 aa
Download sequence Send
to blast |
MDTRKRGRHE GGGFHSNGGF KKNKQGSLFA FSHSVSCEFE LESFSTGVGS KSKPCTKFFS 60
TAGCPFGESC HFLHYVPGGY NAVAQMMNLA PAPPPPRNIP GPPSHSNGSN SSGVKSRICN 120
KYNSAEGCKF GDKCHFAHGE WELGKPLAQS HDDPHAMGPG PGRMGNWMEP HPARPASSFG 180
ASSTAKISVD ASLAGAIIGK GGVHSKQICR QTGAKLSIRD HESNPNLRNI ELEGTFEQIQ 240
QASAMVSELI ATVSISGPGK APGGGGPGAP APPGSNFKTK LCDNFTKGTC TFGERCHFAH 300
GAAELRKSGV *
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