PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr019210.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | NAC | ||||||||
Protein Properties | Length: 545aa MW: 59744.2 Da PI: 4.4959 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 108.2 | 9.9e-34 | 87 | 213 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 p +rFhPt+ee+ ++L kk+++++ ++ + ++ +d++k+ePwdLp+ + + k wy Fs+ d ky ++ r nr+t++g+Wk tgk +++ s Pbr019210.3 87 VPAIRFHPTEEEMA-DFLWKKMKNHNSQACHSLPVIDVCKFEPWDLPErmfpDTPYQAKAWYSFSQPDYKYINSPRCNRITEKGFWKITGKPRDISS- 182 6889********99.9**********999899***************535553344789************************************99. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyr 127 ++++ k+tL+fykgr +k+e+t Wvmhey Pbr019210.3 183 -THVTCKKRTLTFYKGRVSKSERTGWVMHEYY 213 .77888999**********************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-36 | 75 | 241 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 36.143 | 86 | 241 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.7E-15 | 88 | 212 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 545 aa Download sequence Send to blast |
MDTKKSAVPN GIGNKATLED LLLGPTSQTT STNRLLSVEI QVFEASSTPP EIPKGYAFES 60 IDPRGGMGNI SSSTTTSTTA QSVPDMVPAI RFHPTEEEMA DFLWKKMKNH NSQACHSLPV 120 IDVCKFEPWD LPERMFPDTP YQAKAWYSFS QPDYKYINSP RCNRITEKGF WKITGKPRDI 180 SSTHVTCKKR TLTFYKGRVS KSERTGWVMH EYYFTKPKQG SNTSQERDPL RDFVLYRLKK 240 KPNSMSDNKK LQDTLISDDL TDPGNGSCIA SSSGNDQAAT AAAMNHDMTP AAEELLAYKE 300 LEDDLFDSGN HDRGEPGGGI SSDSTDQVIR DMIQQWKSCA PVGEYLNSLL TLPEPPQPPQ 360 PHQPPQLGNA PDVCSDELVD PSTGGCITGN TDNQDAAMNH MISAEEEILA YKQLERALLG 420 NGDHDDGEPG SGISSDFNGL AVDDMILELS AELHKDSDSP FPAPEPPQTN QPHQLGDAPD 480 VHSGEFSNCP SPTNYDNESV INIVYNSQNR ATSERISQDS EAAASALYCF LLIPFEAGME 540 CAAK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-23 | 88 | 244 | 19 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-23 | 88 | 244 | 19 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-23 | 88 | 244 | 19 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-23 | 88 | 244 | 19 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-23 | 75 | 244 | 12 | 171 | NAC domain-containing protein 19 |
3swm_B | 7e-23 | 75 | 244 | 12 | 171 | NAC domain-containing protein 19 |
3swm_C | 7e-23 | 75 | 244 | 12 | 171 | NAC domain-containing protein 19 |
3swm_D | 7e-23 | 75 | 244 | 12 | 171 | NAC domain-containing protein 19 |
3swp_A | 7e-23 | 75 | 244 | 12 | 171 | NAC domain-containing protein 19 |
3swp_B | 7e-23 | 75 | 244 | 12 | 171 | NAC domain-containing protein 19 |
3swp_C | 7e-23 | 75 | 244 | 12 | 171 | NAC domain-containing protein 19 |
3swp_D | 7e-23 | 75 | 244 | 12 | 171 | NAC domain-containing protein 19 |
4dul_A | 7e-23 | 88 | 244 | 19 | 168 | NAC domain-containing protein 19 |
4dul_B | 7e-23 | 88 | 244 | 19 | 168 | NAC domain-containing protein 19 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr019210.3 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009376032.1 | 0.0 | PREDICTED: NAC domain-containing protein 62-like isoform X1 | ||||
Refseq | XP_018507299.1 | 0.0 | PREDICTED: NAC domain-containing protein 62-like isoform X1 | ||||
TrEMBL | A0A498JK55 | 0.0 | A0A498JK55_MALDO; Uncharacterized protein | ||||
STRING | XP_009376032.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF18876 | 2 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04410.1 | 2e-29 | NAC domain containing protein 2 |