PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

ERF

Protein Properties

Length: 242aa MW: 26236 Da PI: 5.7987

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr019145.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	58.8	1.3e-18	68	117	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+++++g Pbr019145.1 68 LYRGVRKRN-WGKWVSEIREPRK---KSRIWLGTFSTPEMAARAHDVAALSIKG 117 69**887.******843...6*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	7.16E-33	67	127	No hit	No description
Pfam	PF00847	7.4E-13	67	117	IPR001471	AP2/ERF domain
SMART	SM00380	9.1E-37	68	131	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	6.9E-32	68	126	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.7E-21	68	126	IPR016177	DNA-binding domain
PROSITE profile	PS51032	23.538	68	125	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.3E-10	69	80	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.3E-10	91	107	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MAPEPNISEA ESTSNSSSCS SGLLQARPNS TANTLNTKTK KPSREQQQVV LKRKRDDDSN 60 NNSSKHPLYR GVRKRNWGKW VSEIREPRKK SRIWLGTFST PEMAARAHDV AALSIKGNSA 120 ILNFPELTEL LPRPASLKPQ DIQAAATKAA AMVHLNSTTS SSLSSSSSSS SCLLSQSEGS 180 DSEELGEIVE LPNIEGSFDS PESRNEFILV NDSLDGWVYP SLGFEGVELN LWGFFSSDSS 240 S*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-20	56	126	2	73	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr019145.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU732433	0.0	GU732433.1 Malus x domestica AP2 domain class transcription factor (AP2D9) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009353569.1	1e-175	PREDICTED: ethylene-responsive transcription factor TINY
Swissprot	Q9LYD3	3e-59	DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBL	D5L0Z3	1e-137	D5L0Z3_MALDO; AP2 domain class transcription factor
STRING	XP_009353569.1	1e-174	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF192	34	263

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11590.1	9e-55	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Galuschka C,Schindler M,Bülow L,Hehl R AthaMap web tools for the analysis and identification of co-regulated genes. Nucleic Acids Res., 2007. 35(Database issue): p. D857-62 [PMID:17148485]