PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr019135.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family GATA
Protein Properties Length: 295aa    MW: 31139.4 Da    PI: 6.1577
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr019135.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.33.6e-17222256135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C +C + kTp+WR gp g+ktLCnaCG++y++ +l
  Pbr019135.1 222 CLHCAAEKTPQWRTGPMGPKTLCNACGVRYKSGRL 256
                  99*****************************9885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.6E-6921275IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.347216252IPR000679Zinc finger, GATA-type
SMARTSM004011.2E-16216266IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.6E-14217253IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577162.85E-13217269No hitNo description
CDDcd002021.57E-12221268No hitNo description
PfamPF003206.8E-15222256IPR000679Zinc finger, GATA-type
PROSITE patternPS003440222247IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MELPEFHHGG YFNGGAAKLL PGDKPTGGDF TVEDLLDFSN EDPFVTTAAD GGGFHDPAAD  60
SSAVTAVDSC NSSVSGGEPH FSGNRSFDNS QFSGDLCVPY DDLAELEWLS NFVEDSFSAD  120
KDLQSLQFLS VSNTTKPQTP ETCSSSETPQ NAPLFPSETP LPGKARSKRS RAAPGDWSTR  180
LLHLSTPNNN TKPPKTTLPK KRDGAIGGGN SNSGSDSSGR KCLHCAAEKT PQWRTGPMGP  240
KTLCNACGVR YKSGRLVPEY RPAASPTFVS AKNIQVGSAC ARVPALAELH FRVG*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr019135.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009353562.10.0PREDICTED: GATA transcription factor 12-like
SwissprotO826323e-58GATA9_ARATH; GATA transcription factor 9
TrEMBLA0A498IZ111e-179A0A498IZ11_MALDO; GATA transcription factor
STRINGXP_009353562.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.16e-53GATA transcription factor 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]