PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr019090.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 356aa    MW: 40346.9 Da    PI: 7.1025
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr019090.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.3e-05195214120
                  EEETTTTEEESSHHHHHHHH CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                  ++Cp C k+F+r  n++ H+
  Pbr019090.1 195 FSCPLCFKTFNRYNNMQMHM 214
                  89*****************9 PP
2zf-C2H214.50.0001279301123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  + C +Cgk F  + + ++H +++
  Pbr019090.1 279 FMCRKCGKAFAVRGDWRTHEKNC 301
                  89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.66195222IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.0E-5195214IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.61195217IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280197217IPR007087Zinc finger, C2H2
SuperFamilySSF576671.77E-6261299No hitNo description
Gene3DG3DSA:3.30.160.609.6E-6275299IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808279299IPR007087Zinc finger, C2H2
SMARTSM0035549279299IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MTDPYPNYFN NGCFSINPHH HFSSTSTPSS INPYNYHPPN YGDYYNFCSS NNLINNINNT  60
LFTNHHHQCS SPPSPPLREA LPLLSQSPSR SHHHEDMQES AVDDDHQNFL ISSRSDDIVH  120
EEEDDENVTV ALHLGLPSRT LSSADLISRL PSPEISSDKE ADVTVASAGY APNRLNKGQY  180
WIPTPAQILI GPTQFSCPLC FKTFNRYNNM QMHMWGHGSQ YRKGPESLRG TQPTAMLRLP  240
CYCCAPGCRN NIEHPRAKPL KDFRTLQTHY KRKHGIKPFM CRKCGKAFAV RGDWRTHEKN  300
CGKLWYCTCG SDFKHKRSLK DHIKAFGQGH AAYGIDCFED EDDAASEIEE NDSFH*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr019090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009376165.10.0PREDICTED: zinc finger protein WIP2-like
RefseqXP_009379450.10.0PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-132ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A498IPH80.0A0A498IPH8_MALDO; Uncharacterized protein
STRINGXP_009376165.10.0(Pyrus x bretschneideri)
STRINGXP_009379450.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-123C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]