PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr019030.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WRKY
Protein Properties Length: 333aa    MW: 36981.5 Da    PI: 7.9589
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr019030.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.71.2e-28169228159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  ++Dgy+WrKYGqK+ +++++pr+YY+C++a +Cpvkkkv++sae+p +++ tYegeHnh 
  Pbr019030.1 169 VNDGYQWRKYGQKVTRDNPCPRAYYKCSFApSCPVKKKVQKSAENPCLLVATYEGEHNHM 228
                  58***************************99****************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.5E-28162230IPR003657WRKY domain
SuperFamilySSF1182901.44E-24167230IPR003657WRKY domain
PROSITE profilePS5081125.809168230IPR003657WRKY domain
SMARTSM007742.9E-32169229IPR003657WRKY domain
PfamPF031061.2E-23170227IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0002238Biological Processresponse to molecule of fungal origin
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009623Biological Processresponse to parasitic fungus
GO:0009651Biological Processresponse to salt stress
GO:0009685Biological Processgibberellin metabolic process
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0031347Biological Processregulation of defense response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MDSTRVNTSL GLNLVPFCRA NDHRAPATMQ QEFEGGCAQL QGNALVKEEA ASHHDVLAEE  60
LNRVSVENKK LTEVLTALCE NYNTLQSHVR ELMTTQQQQN NTSDIYRKRK ADSEDYNNVI  120
GLINPGTNTD TSSISDDKEY SCKRLKENTN LKISRVYVHT DASDTGLIVN DGYQWRKYGQ  180
KVTRDNPCPR AYYKCSFAPS CPVKKKVQKS AENPCLLVAT YEGEHNHMHP GKRAEVTLIA  240
PVSPKQNQQL ITSPISVLPS VAKRSAAPTF LCDDNRISPN SAMYPQETQA PAFQQFLVQQ  300
MASSLTKDPD FTSALAAAIS GRISDHTMAR KW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-21154231176WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr019030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX1129070.0JX112907.1 Malus x domestica WRKY transcription factor 40b mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009347308.10.0PREDICTED: probable WRKY transcription factor 40 isoform X2
TrEMBLV9MHA70.0V9MHA7_MALHU; WRKY transcription factor 40b
STRINGXP_009347307.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97334115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.12e-70WRKY DNA-binding protein 40