PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr018916.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

GRAS

Protein Properties

Length: 736aa MW: 82861.1 Da PI: 5.6038

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr018916.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	391.1	1.3e-119	357	728	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l++lL++cA+avss+d + a++lL+++++++s gd+ qRla++f+++L+arla++++++y al++++ts ++ l+a+++++e++P+++++ + a Pbr018916.1 357 LRTLLISCAQAVSSDDRRTANELLKQIRQHSSAFGDSSQRLAHCFANGLEARLAGTGTQIYTALSSKRTS---AADMLKAYQTYFEACPFMRVAIIFA 451 6789**********************************************************999999...9******************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlelee 193 Nq+I + +e++e++HiiDf+i +G+QWpaL++ L+ R++gpp lRiTg++ p+sg +e+++etg+rLak++e+ +vpfe+n +ak++e++++ee Pbr018916.1 452 NQMISKLAEKAETLHIIDFGILYGFQWPALIHCLSRRDGGPPkLLRITGIELPQSGfrPEERVQETGHRLAKYCERYNVPFEYNG-IAKKWEAIQYEE 548 **********************************9988689******9*************************.7******* PP GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291 L+vk++E+laVn+ ++ ++llde+v ++s+rd+vL+l++s++P++++++ + +++++ F++rf eal ++salfd+++++++re++ r + E+e+lg Pbr018916.1 549 LKVKRDEVLAVNCLFRFKNLLDETVVVNSPRDAVLNLIRSMNPDIFIHSVINGSYSAPFFVTRFREALFHFSALFDMFDTNISREDQMRLMFEEEFLG 646 ********************************************************************************************** PP GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 re+vn vaceg+er+ r et+++W+ r ++aGFk++pl+ + ++++++ +++ + + ++v+e+ +++++gWk+r ++s S+W Pbr018916.1 647 REVVNTVACEGSERVVRPETYKQWQVRNMRAGFKQLPLDRDLMNKIRAKVKRGYHRDFMVDEDGNWMLQGWKGRIIYSSSCW 728 **************************************************999*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	67.47	331	709	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.4E-117	357	728	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 736 aa Download sequence Send to blast
MDPSSYQLPD SNSNFIDQTL SPNFNEYPSS DPFVDLSFLC QNPSNSALSP SLSPEGDDGD 60 YSDSVLRYIN QVLMEEDMET KPCMFHDPLA VQAAEKSLFE VLGGKFPPSP NQHPHNFESP 120 YGRSSATFSD HSGNNSSVLS SSTSYWDDSR SSVDVIEHKP SILQNPIPEN FVFQSKAKSQ 180 FLSNGNGLVG SYVSDPMVSN LFGENELVLQ FNRGVEEARK FLPRGQLIVD VENNKPYTVA 240 NGKAENVVVK TEKDEGEYFP TSSRGKKSHE REDADLEVGR STKQSAVYED TEADLSEIFD 300 KVLLCGGGES KPIVSEGEEV CLDEANKALQ QNGQSVGTSN GKTRAKKKGD KKEVIDLRTL 360 LISCAQAVSS DDRRTANELL KQIRQHSSAF GDSSQRLAHC FANGLEARLA GTGTQIYTAL 420 SSKRTSAADM LKAYQTYFEA CPFMRVAIIF ANQMISKLAE KAETLHIIDF GILYGFQWPA 480 LIHCLSRRDG GPPKLLRITG IELPQSGFRP EERVQETGHR LAKYCERYNV PFEYNGIAKK 540 WEAIQYEELK VKRDEVLAVN CLFRFKNLLD ETVVVNSPRD AVLNLIRSMN PDIFIHSVIN 600 GSYSAPFFVT RFREALFHFS ALFDMFDTNI SREDQMRLMF EEEFLGREVV NTVACEGSER 660 VVRPETYKQW QVRNMRAGFK QLPLDRDLMN KIRAKVKRGY HRDFMVDEDG NWMLQGWKGR 720 IIYSSSCWVP SRSRS*

Sequence ? help Back to Top

Protein Sequence Length: 736 aa Download sequence Send to blast

MDPSSYQLPD SNSNFIDQTL SPNFNEYPSS DPFVDLSFLC QNPSNSALSP SLSPEGDDGD  60
YSDSVLRYIN QVLMEEDMET KPCMFHDPLA VQAAEKSLFE VLGGKFPPSP NQHPHNFESP  120
YGRSSATFSD HSGNNSSVLS SSTSYWDDSR SSVDVIEHKP SILQNPIPEN FVFQSKAKSQ  180
FLSNGNGLVG SYVSDPMVSN LFGENELVLQ FNRGVEEARK FLPRGQLIVD VENNKPYTVA  240
NGKAENVVVK TEKDEGEYFP TSSRGKKSHE REDADLEVGR STKQSAVYED TEADLSEIFD  300
KVLLCGGGES KPIVSEGEEV CLDEANKALQ QNGQSVGTSN GKTRAKKKGD KKEVIDLRTL  360
LISCAQAVSS DDRRTANELL KQIRQHSSAF GDSSQRLAHC FANGLEARLA GTGTQIYTAL  420
SSKRTSAADM LKAYQTYFEA CPFMRVAIIF ANQMISKLAE KAETLHIIDF GILYGFQWPA  480
LIHCLSRRDG GPPKLLRITG IELPQSGFRP EERVQETGHR LAKYCERYNV PFEYNGIAKK  540
WEAIQYEELK VKRDEVLAVN CLFRFKNLLD ETVVVNSPRD AVLNLIRSMN PDIFIHSVIN  600
GSYSAPFFVT RFREALFHFS ALFDMFDTNI SREDQMRLMF EEEFLGREVV NTVACEGSER  660
VVRPETYKQW QVRNMRAGFK QLPLDRDLMN KIRAKVKRGY HRDFMVDEDG NWMLQGWKGR  720
IIYSSSCWVP SRSRS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-51	364	730	26	380	Protein SCARECROW
5b3h_A	3e-51	364	730	25	379	Protein SCARECROW
5b3h_D	3e-51	364	730	25	379	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr018916.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009375902.1	0.0	PREDICTED: scarecrow-like protein 14
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A498IRE0	0.0	A0A498IRE0_MALDO; Uncharacterized protein
STRING	XP_009375902.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]