PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr018552.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family SBP
Protein Properties Length: 984aa    MW: 109108 Da    PI: 6.7156
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr018552.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.27.2e-41148225178
                  --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
          SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                  +Cqve+C+adls+ak+yhrrhkvC++hska+++lv  ++qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+++
  Pbr018552.1 148 VCQVEDCKADLSNAKDYHRRHKVCDMHSKATKALVGSVMQRFCQQCSRFHALQEFDEGKRSCRRRLAGHNRRRRKAHP 225
                  6**************************************************************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.6E-32145210IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.12146223IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.05E-37147228IPR004333Transcription factor, SBP-box
PfamPF031102.9E-29149222IPR004333Transcription factor, SBP-box
Gene3DG3DSA:1.25.40.201.6E-6303330IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484034.82E-8755867IPR020683Ankyrin repeat-containing domain
CDDcd002042.45E-8758865No hitNo description
Gene3DG3DSA:1.25.40.201.6E-6758864IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 984 aa     Download sequence    Send to blast
MEAFGGRARN FYVPMVPDLK GAGKKSLEWD LNDWKWDGDL FTASPLNAVQ SDCRSRQLFP  60
LGLPETPSTA GLSHSSSSGS DGICPGNEKG KRELEKRRRA SFVENEGLND EVGSLNLKLG  120
GQAYPIMEGE VQNGKKTKIV GTTLNRAVCQ VEDCKADLSN AKDYHRRHKV CDMHSKATKA  180
LVGSVMQRFC QQCSRFHALQ EFDEGKRSCR RRLAGHNRRR RKAHPDTAVN GGSLNNESGS  240
SYLLISLLRI LSNMHSSSSD QTKDQDVVSH LLRSLANVAD TADGRNISTL LQGSQGLFNS  300
GTSVQTARKV LDMNAGVNTE DPLRSKGHCP ILPVSRDSSE SKSVTPEAAS RRFQLNDIDL  360
NNTYDDSQDY VENLGNSHVP ASPGTASLGF PSWMQRDSHK SSPPQTSGNS DLTSTQSPSS  420
SSGEAQSHTD RIVFKLFGKD PNELPLALRS QILDWLSHSP TNIESYIRPG CIILTIYLRL  480
EKSTWEEFCC HLGSSLKTLL DAADDPFWRT GWVYTRVQDF VAFTYNGEVV LDTPLPLKSN  540
KSCRISCIKP IAISLSERAE FVVKGFNLSS STTRLLCALE GKYLAQETCY DLLDDADSTV  600
EDDEQQCLKF SCSIPNVTGR GFIEVEDHGL SSSFFPFIVA EQEVCSEICM LEDVIEVSET  660
DDDIQSGPEK VEAKNQALDF IHELGWLLHR SRVKFRLGQL DPNLDTFPSG RFRLLMEFSI  720
DHDWCAVVKK LLGILFDGTV DAGEHPSLES ALLDMGLLHR AVRINSRRMV EFLLRFVPGL  780
TGSEQKEQVD RDGNSFLFKP DVVGPMGLTP LHIAASTDGC EQVLDALTDD PGKVGIKAWK  840
NARDSRGLTP YDYACLRSRY SYVHIVQRKI SNTLERGYVV LDIPGLTLDR NGKQKQSDAH  900
KSSRVASLET EKNEIKAILR HCRLCEHKPA YSTTRSLVYR PAMLSMVAVA AVCVCVALLF  960
KSNPEVVFVL EPFRWEHLKF GSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-291482221084squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16095614}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00603PBMTransfer from AT2G47070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr018552.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009353416.10.0PREDICTED: squamosa promoter-binding-like protein 1
SwissprotQ9SMX90.0SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBLA0A498HJS40.0A0A498HJS4_MALDO; Uncharacterized protein
STRINGXP_009353416.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15393495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]